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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTGTACGGGTTCGGAACGAACAGTGAAGGCCTTCATGATCATCACGCACCAgtatgaactatgaaccaattaaacaaacaaaaccaatttaattatctaggaatatggtcagcgaatcgacgttaatactgtacgtgtaaacactgtgctgttcag

Basic information

species Zea mays
transcript GRMZM2G145579_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145579_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g42470.1 (Oryza sativa), 5'ss of exon 5
TTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTGTACGGGTTCGGAACGAACAGTGAAGGCCTTCATGATCAT-CACGCACCAgtatgaactatgaaccaattaaacaaacaaaaccaatttaattatctaggaatatggtcagcgaatcgacgttaatactgtacgtgtaaacactgtgctgttcag
||||| |||||||||||||| || |||||||||||| |||| || || |||| | |||| || ||||| ||||| ||   |   | |   || ||   |    |  | ||  ||| |   | ||  | | | ||| |   ||  || ||   |  |   |||||  | | |                      
TTCCTATCCATGAGGATTGCTTCAATGAGCCCAGTGTTGTATGGCTTTGGAATGGACAGCGATGGCCTCCATGACCAAgtaaatatctaaataaatatttgtaccttgaactaaatatgcctaaaattaatttcttgtg-taaagttagattaatgttcttaatctttttcag--------------------