1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgctacatgcatgcaaatagattttccagactatctccctgttactttttatcctaaaacttgttgcttctcag
species | Zea mays |
transcript | GRMZM2G145258_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|149105848|gb|EE291447.2|EE291447
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGGGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|17921801|gb|BM259452.1|BM259452
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|24763569|gb|CA398741.1|CA398741
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTCAAGCTTCAGAGGCCTGTCEST: gi|30052363|gb|AI065652.2|AI065652
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|24767178|gb|CA402322.1|CA402322
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|213178623|gb|FM189778.1|FM189778
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|31360389|gb|CD444746.1|CD444746
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|84977073|gb|DW475495.1|DW475495
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: TGAAGATACTCAAGGCCCCCAAGTTTCGATCTTGGGGAAACTCATGGGAG GTTCATGGCGACCTACAAAGAGGEST: gi|19770034|gb|BQ034755.1|BQ034755
genomic: TGAAGATACTCAAGGCCCCCAAGTT-CGATCTTGGG-AAACTCATGG-AGgtaattgcta ... tgcttctcagGTTCATGGCGAC-TACAAAGAGG
EST: AGGTGAAGATACTCAAGGCCCCCCAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|16377119|gb|BI991771.1|BI991771
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|12971869|gb|BG267698.1|BG267698
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|5005674|gb|AI711736.1|AI711736
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|31359742|gb|CD444099.1|CD444099
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|18168263|gb|BM338103.1|BM338103
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|31357009|gb|CD441366.1|CD441366
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGCCCTGTCEST: gi|37376013|gb|CF624502.1|CF624502
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|6563695|gb|AW231422.1|AW231422
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|83279071|gb|DV943079.1|DV943079
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|67018238|gb|CO446987.1|CO446987
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAAGCCTGTCEST: gi|213183157|gb|FM184569.1|FM184569
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: NGGTGAAGNTACTCAAGGCCCCCAAGTTCGATCTTGGGNAACTCATNGAG NTTCANNGCGACTAEST: gi|166681393|gb|EG304290.1|EG304290
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTA
EST: GTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAAAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCEST: gi|84351598|gb|DW246003.1|DW246003
genomic: GTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGA--Ggtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|67042647|gb|CO468902.1|CO468902
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACNAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|6527053|gb|AW216269.1|AW216269
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|67013865|gb|CO442614.1|CO442614
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|4837583|gb|AI670673.1|AI670673
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|84977492|gb|DW475914.1|DW475914
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|13490883|gb|BG517647.1|BG517647
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAAACCTGTCEST: gi|95107896|gb|EB740125.1|EB740125
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|4647336|gb|AI622411.1|AI622411
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|19436587|gb|BM952997.1|BM952997
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCEST: gi|5871099|gb|AW017540.1|AW017540
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgctacatgcatgcaaatagattttccagactatctccctgttactttttatcctaaaacttgttgcttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA