Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATATAAAGGTTCAAGGTTTCGAGCTGCTATTGTTTTCATTCTAGGATTCTGGATGTTGGACCTGGCAAACAATACAGTGCAAgtaagcatgcgatctgccatgcctgcaccatgtctttaccaactttggtgctgaaattttattgtaagagtatttttatggatgttctcctaacattgttccttcatgttatgtttag

Basic information

species Zea mays
transcript GRMZM2G145107_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145107_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g58080.1 (Oryza sativa), 5'ss of exon 5
AACATATAAAGGTTCAAGGTTTCGAGCTGCTATTGTTTTCATTCTAGGATTCTGGATGTTGGACCTGGCAAACAATACAGTGCAAgtaagcat-----gcgatctgccatgcctgcaccatgtctttaccaactttg---------gtgctgaaattttattgtaagagtatttttatggatgttctccta-acattgttccttcatgttatgtttag---------
 ||||||||||||||||| |||||||| |||||| ||||| |||| || |||||||||||||| || |||||||||||||| ||||||||| |         | |||    | |      | | |  ||||| ||||          |||    | || |||| |  |   |    ||||||||||||  | |   |||| || | |    | ||            
TACATATAAAGGTTCAAGATTTCGAGCAGCTATTATTTTCGTTCTTGGGTTCTGGATGTTGGATCTCGCAAACAATACAGTTCAAgtaagcctcttcaaaagtttgcttgtcgtcatttgtatttgcaccaaatttgtcaaaatatatgccatgaattaattggattacc-tcaccatggatgttctctaatatcctgtttctcctttcctttttccctacatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78120050|gb|DV538434.1|DV538434
EST:     TTTTCATTCTAGGATTCTGGATGTTGGACCTGGCAAACAATACAGTGCAA                         GGTCCTGCGCGTGCTCTTCTAGCTGATCTTTCAG
genomic: TTTTCATTCTAGGATTCTGGATGTTGGACCTGGCAAACAATACAGTGCAAgtaagcatgc ... ttatgtttagGGTCCTGCGCGTGCTCTTCTAGCTGATCTTTCAG
EST: gi|93282781|gb|EB675045.1|EB675045
EST:     TTTCATTCTAGGATTCTGGATNGT-GGACCTGGCAAACAATACAGTGCAA                         GGTCCTGCGCGTGCTCTTCTAGCTGATCTTTCAG
genomic: TTTCATTCTAGGATTCTGGAT-GTTGGACCTGGCAAACAATACAGTGCAAgtaagcatgc ... ttatgtttagGGTCCTGCGCGTGCTCTTCTAGCTGATCTTTCAG
EST: gi|19855127|gb|BQ060179.1|BQ060179
EST:     TTTTCATTCTAGGATTCTGGATGTTGGACCTGGCAAACAATACAGTGCAA                         GGTCCTGCTCGTGCTCTTCTAGCTGATCTTTCAG
genomic: TTTTCATTCTAGGATTCTGGATGTTGGACCTGGCAAACAATACAGTGCAAgtaagcatgc ... ttatgtttagGGTCCTGCGCGTGCTCTTCTAGCTGATCTTTCAG
EST: gi|78078077|gb|DV506492.1|DV506492
EST:     TTTTCATTCTAGGATTCTGGATGTTGGACCTGGCAAACAATACAGTGCAA                         GGTCCTGCGCGTGCTCTTCTAGCTGATCTTTCAG
genomic: TTTTCATTCTAGGATTCTGGATGTTGGACCTGGCAAACAATACAGTGCAAgtaagcatgc ... ttatgtttagGGTCCTGCGCGTGCTCTTCTAGCTGATCTTTCAG