1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTGATGGGTTCATTGACCTTGATGCATATGATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttctcacacaagactcactcttgaatattaaatgtccagtcagtattgttcttcagaatctgaaatcttaataagtacag
species | Zea mays |
transcript | GRMZM2G144716_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGEST: gi|6636927|gb|AW261199.1|AW261199
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAACTGGGTGAATTCACCCGGGCAACAAGAAGACAACTEST: gi|71429695|gb|DR810745.1|DR810745
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACT
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGEST: gi|78081291|gb|DV509703.1|DV509703
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGEST: gi|78081290|gb|DV509702.1|DV509702
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGEST: gi|32838973|gb|CD978654.1|CD978654
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCAEST: gi|60340500|gb|DN207473.1|DN207473
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGEST: gi|76917524|gb|DV166879.1|DV166879
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGEST: gi|71429835|gb|DR810885.1|DR810885
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGEST: gi|148957873|gb|EC904027.2|EC904027
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGEST: gi|211417239|gb|FL450863.1|FL450863
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGATGGGTTCATTGACCTTGATGCATATGATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttctcacacaagactcactcttgaatattaaatgtccagtcagtattgttcttcagaatctgaaatcttaataagtacag
- - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG