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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTACTTGCAGCTCTTGGATCAATCCAGTTTGTGTCCAACATTGCTTTTGCCTACTTTGTTTTGAACAAGACTATTTCAGTGAAgtatgtatgattctcactttctggtagctggaatgaaaattacaataactacatggaatcatgtgactatgaagcttctgctattctttccag

Basic information

species Zea mays
transcript GRMZM2G144254_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144254_T06 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 5
TCACTACTTGCAGCTCTTGGATCAATCCAGTTTGTGTCCAACATTGCTTTTGCCTACTTTGTTTTGAACAAGACTATTTCAGTGAAgtatgtatgattctc---------actttctggtagctggaatgaaaattacaata--actacatggaatcatgtgactatgaagcttctgctattctttccag
||||| ||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||| ||||||||||| |||||||||||||||| ||  ||||          | ||| |  ||   | |||||     | | |   | ||| |||||| ||     ||||||| || | || | |||| |||
TCACTTCTTGCAGCTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGACCATTTCAGTGAAgtatgcattgttctactttttggaatttttttataaaggaaatgagttccaaacttccaatacttggaattatagatttatgaagtttttactctgcttttcag

upper sequence: GRMZM2G144254_T06 (Zea mays), 5'ss of exon 4
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 5
TCACTACTTGCAGCTCTTGGATCAATCCAGTTTGTGTCCAACATTGCTTTTGCCTACTTTGTTTTGAACAAGACTATTTCAGTGAAgtatgtatgattctcactt---tctggtagctggaat--gaaaattacaataact--acatggaatcatgtgactatg-aagcttctgctatt----ctttccag
||||| |||||||| || |||||||| || || || ||||||||||| ||||||||||| ||||||||||| |   | || || ||||||||   | ||| |  |     || |  | | | |  || | |   ||||  |  |  |  |   ||    ||| | ||  ||    ||||    |||| |||
TCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaaatctgaagtgagcttgatttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgcttcttttcag