1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTGGGGGACGGCTAATGCTATCGGCCGAGAGGTTGGCATCGAGAAGATAATCGCTGAAGCGAAACCGGAGCAGAAGGCCGAGAGGGTGAAGGAACTCCAGgtgaggtatctatccggtgtttcgtttccttttgtactcgtttccaagagcgctctggactctggtccagttaattactagtacgtagcttctcctgagtcctgacacaaactgtcgcag
species | Zea mays |
transcript | GRMZM2G144083_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCGCTGAAGCGAAACCGGAGCAGAAGGCCGAGAGGGTGAAGGAACTCCAG CTGTCTGGAAGGACCEST: gi|62525726|gb|DN828374.1|DN828374
genomic: TCGCTGAAGCGAAACCGGAGCAGAAGGCCGAGAGGGTGAAGGAACTCCAGgtgaggtatc ... actgtcgcagCTGTCTGGAAGGACC
EST: TCGCTGAAGCGAAACCGGAGCAGAAGGCCGAGAGGGTGAAGGAACTCCAG CTGTCTAGAAGGACCGTGGCGATGGTTGGCGACGGGATCAACGACTCCCCCEST: gi|160481620|gb|EY254452.1|EY254452
genomic: TCGCTGAAGCGAAACCGGAGCAGAAGGCCGAGAGGGTGAAGGAACTCCAGgtgaggtatc ... actgtcgcagCTGTCTGGAAGGACCGTGGCGATGGTTGGCGACGGGATCAACGACTCCCCC
EST: TCGCTGAAGCGAAACCGGAGCAGAAGGCCGAGAGGGTGAAGGAACTCCAG CTGTCTGGAAGGACCGTGGCGATGGTTGGCGACGGGATCAACGACT
genomic: TCGCTGAAGCGAAACCGGAGCAGAAGGCCGAGAGGGTGAAGGAACTCCAGgtgaggtatc ... actgtcgcagCTGTCTGGAAGGACCGTGGCGATGGTTGGCGACGGGATCAACGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGGGGACGGCTAATGCTATCGGCCGAGAGGTTGGCATCGAGAAGATAATCGCTGAAGCGAAACCGGAGCAGAAGGCCGAGAGGGTGAAGGAACTCCAGgtgaggtatctatccggtgtttcgtttccttttgtactcgtttccaagagcgctctggactctggtccagttaattactagtacgtagcttctcctgagtcctgacacaaactgtcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA