1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTATGTCTTGGGATTACCTATGGTCAGCATGCTTGTTTATGTCTGGAGCCGAGAGAATCCAAATGCCCAGATAAATATATACGGCATCCTCCAATTGAAGgtatgtagtttcactaacaattgattttgcaattcacatttctgtgtcgctcagttggtgaaaggcaaagtatgacctgtgggcaatttgattaattcgttagtagttgatgtactctcttcttttgcag
species | Zea mays |
transcript | GRMZM2G143817_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGAGAATCCAAATGCCCAGATAAATATATACGGCATCCTCCAATTGAAG GCGTTTTATCTTCCATGGGTTATGCTCTTATTAGATGTGATATTTGGATCAEST: gi|5871419|gb|AW017890.1|AW017890
genomic: GAGAGAATCCAAATGCCCAGATAAATATATACGGCATCCTCCAATTGAAGgtatgtagtt ... tcttttgcagGCGTTTTATCTTCCATGGGTTATGCTCTTATTAGATGTGATATTTGGATCA
EST: GAGAGAATCCAAATGCCCAGATAAATATATACGGCATCCTCCAATTGAAG GCGTTTTATCTTCCATGGGTTATGCTCTTATTAGATGTGATATTTGGATCAEST: gi|18176218|gb|BM351250.1|BM351250
genomic: GAGAGAATCCAAATGCCCAGATAAATATATACGGCATCCTCCAATTGAAGgtatgtagtt ... tcttttgcagGCGTTTTATCTTCCATGGGTTATGCTCTTATTAGATGTGATATTTGGATCA
EST: GAGAGAATCCAAATGCCCAGATAAATATATACGGCATCCT-CAATTGAAG GCGTTTTATCTTCCATGGGTTATGCTCTTATTAGATGTGATATTTGGATCAEST: gi|67017752|gb|CO446501.1|CO446501
genomic: GAGAGAATCCAAATGCCCAGATAAATATATACGGCATCCTCCAATTGAAGgtatgtagtt ... tcttttgcagGCGTTTTATCTTCCATGGGTTATGCTCTTATTAGATGTGATATTTGGATCA
EST: GAGAGAATCCAAATGCCCAGATAAATATATACGGCATCCTCCAATTGAAG GCGTTTTATCTTCCATGGGTTATGCTCTTATTAGATGTGATATTTGGATCA
genomic: GAGAGAATCCAAATGCCCAGATAAATATATACGGCATCCTCCAATTGAAGgtatgtagtt ... tcttttgcagGCGTTTTATCTTCCATGGGTTATGCTCTTATTAGATGTGATATTTGGATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGTCTTGGGATTACCTATGGTCAGCATGCTTGTTTATGTCTGGAGCCGAGAGAATCCAAATGCCCAGATAAATATATACGGCATCCTCCAATTGAAGgtatgtagtttcactaacaattgattttgcaattcacatttctgtgtcgctcagttggtgaaaggcaaagtatgacctgtgggcaatttgattaattcgttagtagttgatgtactctcttcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG