1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAATCCTGGGCCGGCTCCTTTACGCAGCGAAAGTAGTGGCAGAAAAGGAAGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGATgtaaggagcacagccgcaacctttgcccccacttttttttttatctctatttctgtttcttctctccaaatgtttttcgtttttgttcaatgctaatggtgtgccatttgtctgtcacag
species | Zea mays |
transcript | GRMZM2G143767_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGAT GCCAATCTGTCTATCATCTGCACCTGCATGTACTTGGTGEST: gi|60340294|gb|DN207267.1|DN207267
genomic: AGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGATgtaaggagca ... tctgtcacagGCCAATCTGTCTATCATCTGCACCTGCATGTACTTGGTG
EST: AGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGAT GCCAATCTGTCTATCATCTGCACCTGCATGTACTTGGTGGAAGGCAGATGAEST: gi|161590785|gb|EY958727.1|EY958727
genomic: AGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGATgtaaggagca ... tctgtcacagGCCAATCTGTCTATCATCTGCACCTGCATGTACTTGGTGGAAGGCAGATGA
EST: GTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGGAAGGATEST: gi|211478451|gb|FL136940.1|FL136940
genomic: GTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTG-AAGGAT
EST: AGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGAT GCCAATCTGTCTATCATCTGCACCTGCATGTACTTGGTGEST: gi|211478447|gb|FL136936.1|FL136936
genomic: AGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGATgtaaggagca ... tctgtcacagGCCAATCTGTCTATCATCTGCACCTGCATGTACTTGGTG
EST: AGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGAT GCCAATCTGTCTATCATCTGCACCTGCATGTACTTGGTGGAAGGCAGATGAEST: gi|211478453|gb|FL136942.1|FL136942
genomic: AGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGATgtaaggagca ... tctgtcacagGCCAATCTGTCTATCATCTGCACCTGCATGTACTTGGTGGAAGGCAGATGA
EST: AGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGAT GCCAATCTGTCTATCATCTGCACCTGCATGTACTTGGTGGAAGGCAGATGAEST: gi|211376140|gb|FL136932.1|FL136932
genomic: AGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGATgtaaggagca ... tctgtcacagGCCAATCTGTCTATCATCTGCACCTGCATGTACTTGGTGGAAGGCAGATGA
EST: AGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGAT GCCAATCTGTCTATCATCTGCACCTGCATGTACTTGGTGGAAGGCAGATGA
genomic: AGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGATgtaaggagca ... tctgtcacagGCCAATCTGTCTATCATCTGCACCTGCATGTACTTGGTGGAAGGCAGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATCCTGGGCCGGCTCCTTTACGCAGCGAAAGTAGTGGCAGAAAAGGAAGGTGTAGCGAGTGGGTACCGTGTTGTCATCAACAATGGTGCTGAAGGATgtaaggagcacagccgcaacctttgcccccacttttttttttatctctatttctgtttcttctctccaaatgtttttcgtttttgttcaatgctaatggtgtgccatttgtctgtcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG