Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTGCCCATGAAATACCATCCGAGAGATGTTGATTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttatcttagtacatatattgtattcagctttttcatgatcaaatctttttttgactttgttaactctatttcaacag

Basic information

species Zea mays
transcript GRMZM2G143651_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143651_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g57180.2 (Oryza sativa), 5'ss of exon 3
ATTGTGCCCATGAAATACCATCCGAGAGATGTTGATTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttatcttagtacatatattgtattcagctttttcatgatcaaatctttttttgactttgttaactctatttcaacag
||||| || ||||||||| |||| |||||||| ||||||||||||||||| |||||||| || |||||||| |||||||| |||||| ||| || ||| |||||   || ||||||||           |||||||  ||  ||||| ||| ||||| ||||||||||
ATTGTTCCTATGAAATACAATCCAAGAGATGTGGATTCAATTAAGGCTGTCATGGCCAAATCCAATGTGGTCATTAACCTAATAGgtatgtctaacttggtaca-gcatcgtattcag---------agtcaaatcccttcctgactatgtcaactcaatttcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211398059|gb|FL169341.1|FL169341
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTC
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTC
EST: gi|32926106|gb|CF030918.1|CF030918
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|32926653|gb|CF031465.1|CF031465
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|71533831|gb|DR784590.1|DR784590
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|29947686|gb|CB816784.1|CB816784
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACA
EST: gi|211398057|gb|FL169339.1|FL169339
EST:     CAATTAAAGCTGTTATGGGCCAAGTCAA-TGTGGTTATTANNCCTC-TAG                         GACGAGAGTATGAAACCAGGAACTACAGCTTCGAAGAAGTAAACCACCAT
genomic: CAATTAAGGCTGTTATGG-CCAAGTCAAATGTGGTTATTAA-CCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCAT
EST: gi|22545624|gb|BU097983.1|BU097983
EST:     TTCAATTAAGGCTGTTATGGNCAAGTCAAATGTGGNTATTAACCTCATAG                         GACGAGAGTATGAAACAAG
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAG
EST: gi|67037324|gb|CO464172.1|CO464172
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|31348826|gb|CD433183.1|CD433183
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|149074514|gb|EE162909.2|EE162909
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|211398061|gb|FL169343.1|FL169343
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGNAAACA-GGAACTACAGCTTCGAAGA-GTAAACCACCAT
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATG-AAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCAT
EST: gi|148939122|gb|EC883548.2|EC883548
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|211398056|gb|FL169338.1|FL169338
EST:     TCA-TTAAGGCNTGT-ATGGCCAAGTCNAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACANGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TCAATTAAGGC-TGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|20802704|gb|BQ293754.1|BQ293754
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|211110877|gb|FL478099.1|FL478099
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|149086938|gb|EE176480.2|EE176480
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|30087963|gb|CB886168.1|CB886168
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|78087119|gb|DV515512.1|DV515512
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|67015444|gb|CO444193.1|CO444193
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|148977668|gb|EE026094.2|EE026094
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|21809651|gb|BQ667969.1|BQ667969
EST:     TTCAATTACGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTAC
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTAC
EST: gi|148963040|gb|EE013991.2|EE013991
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|31350209|gb|CD434566.1|CD434566
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|148931470|gb|EC874468.2|EC874468
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|211398062|gb|FL169344.1|FL169344
EST:     TTCAATTAAGGCTGTTATGGSCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTC
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTC
EST: gi|50322405|gb|CO517531.1|CO517531
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|149096347|gb|EE182072.2|EE182072
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|149069994|gb|EE158394.2|EE158394
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|32925472|gb|CF030284.1|CF030284
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|31354660|gb|CD439017.1|CD439017
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|32926481|gb|CF031293.1|CF031293
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|149077783|gb|EE166504.2|EE166504
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|31664374|gb|CD573099.1|CD573099
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|211398060|gb|FL169342.1|FL169342
EST:     TCA-TTNAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAAC
genomic: TCAATT-AAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAAC
EST: gi|31911131|gb|CD651773.1|CD651773
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|211523599|gb|FL477918.1|FL477918
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GGCGAGAGTATGAAACAAGGAACTTCAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|30031665|gb|CB833516.1|CB833516
EST:     TTCAATTAAGGCTGTTATGGNCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|31348834|gb|CD433191.1|CD433191
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|149069952|gb|EE158352.2|EE158352
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|32925514|gb|CF030326.1|CF030326
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|31358221|gb|CD442578.1|CD442578
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|9794698|gb|BE553006.1|BE553006
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|211022386|gb|FL169353.1|FL169353
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCACATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTT
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTT
EST: gi|32926805|gb|CF031617.1|CF031617
EST:     TTCAATTAAGGCTGTTATGCCCAAGTCAAATGTGGTTATTACCCTCATAG                         GACGAGAGTATGAACCAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|60352887|gb|DN219860.1|DN219860
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|211523598|gb|FL477917.1|FL477917
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|32924876|gb|CF029688.1|CF029688
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|211398066|gb|FL169348.1|FL169348
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCAC-ATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|211390184|gb|FL169302.1|FL169302
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|149013853|gb|EE043334.2|EE043334
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|149106264|gb|EE291962.2|EE291962
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|71773401|gb|DR971305.1|DR971305
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|32925685|gb|CF030497.1|CF030497
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|211395438|gb|FL169328.1|FL169328
EST:     TTCAATTTAGGCTGTTATGGCCAAGTCAAATGTGGTTAT-AACCTCATAG                         GACGAGAGTATGAAACAAGGGACTACAGCTTTCGAAGAAGTA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTT-CGAAGAAGTA
EST: gi|71445608|gb|DR826658.1|DR826658
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|211110876|gb|FL478098.1|FL478098
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|29577180|gb|CB617292.1|CB617292
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|32925444|gb|CF030256.1|CF030256
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|149055287|gb|EE156221.2|EE156221
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|31612343|gb|CD568965.1|CD568965
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
EST: gi|32925655|gb|CF030467.1|CF030467
EST:     TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAG                         GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA
genomic: TTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 456

ATTGTGCCCATGAAATACCATCCGAGAGATGTTGATTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 717

ATTGTGCCCATGAAATACCATCCGAGAGATGTTGATTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 552

ATTGTGCCCATGAAATACCATCCGAGAGATGTTGATTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 693

ATTGTGCCCATGAAATACCATCCGAGAGATGTTGATTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttat ... atttcaacagGACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGTGCCCATGAAATACCATCCGAGAGATGTTGATTCAATTAAGGCTGTTATGGCCAAGTCAAATGTGGTTATTAACCTCATAGgtgtgtttatcttagtacatatattgtattcagctttttcatgatcaaatctttttttgactttgttaactctatttcaacag

- - - - - - - - - - - - - - - - - - - - - -  GCTGTT