1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTCCCTGAGCAGTGCAAGGTTTCAAAAATAAATTTACCTACCTATTTTATGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGGgtaattgaattgtaccatgtagtgcttttacctatgatgaccaaaacttgataactcatgtgcagttgacttctgttttgccag
species | Zea mays |
transcript | GRMZM2G143525_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGG GCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGAEST: gi|71758607|gb|DR956544.1|DR956544
genomic: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGGgtaattgaat ... gttttgccagGCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGA
EST: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGG GCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGAEST: gi|211067166|gb|FL447230.1|FL447230
genomic: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGGgtaattgaat ... gttttgccagGCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGA
EST: GGAATGGATTAACTTGAAGGATATCTACCTCCAACTTCTATAACAGAAGG GCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGAEST: gi|89758511|gb|DY687667.1|DY687667
genomic: GGAATGGATTAACTTGAAGGATATCTACCT-CAACTTCTATAACAGAAGGgtaattgaat ... gttttgccagGCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGA
EST: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGG GCAACTGGAATGATGACAATGAEST: gi|211396340|gb|FL436997.1|FL436997
genomic: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGGgtaattgaat ... gttttgccagGCAACTGGAATGATGACAATGA
EST: TGGAATGGATTAACTTGAAGGATATCTACCTCDACBTCTATDACAGAAGG GCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGAEST: gi|4647496|gb|AI622571.1|AI622571
genomic: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGGgtaattgaat ... gttttgccagGCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGA
EST: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGG GCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGAEST: gi|38687505|gb|CK144536.1|CK144536
genomic: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGGgtaattgaat ... gttttgccagGCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGA
EST: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGG GCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGAEST: gi|16380290|gb|BI993413.1|BI993413
genomic: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGGgtaattgaat ... gttttgccagGCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGA
EST: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGG GCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGAEST: gi|13558079|gb|BG549435.1|BG549435
genomic: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGGgtaattgaat ... gttttgccagGCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGA
EST: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGG GCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGA
genomic: TGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGGgtaattgaat ... gttttgccagGCAACTGGAATGATGACAATGATGAGAGAACTTCAACTGCCAATTGTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCCCTGAGCAGTGCAAGGTTTCAAAAATAAATTTACCTACCTATTTTATGGAATGGATTAACTTGAAGGATATCTACCTCAACTTCTATAACAGAAGGgtaattgaattgtaccatgtagtgcttttacctatgatgaccaaaacttgataactcatgtgcagttgacttctgttttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG