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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCTTGCAGTATACACTGGTCCAACAGgtatgcctctttctctgtatggctaatagtcaacttgaaataagactataagagagtcctcaaatggtgacttactgaactgcag

Basic information

species Zea mays
transcript GRMZM2G143356_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143356_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g55940.1 (Oryza sativa), 5'ss of exon 4
GCAGCTTGCAGTATACACTGGTCCAACAGgtatgcctctttctctgtatggctaatagtcaacttgaaataagactataagagagtcct--caaatggtgacttactg----aactgcag
|||||| ||| |||||||||||||||||||||||| | ||| | | ||||  | |||  | | |  |||   ||  |  || ||    |  || |   |  |||         | |||||
GCAGCTCGCAATATACACTGGTCCAACAGgtatgcatttttatttttatgatttataacctattacaaaatggagaaccagtgaacaataacagacattttcttttaataccgattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148951918|gb|EC897694.2|EC897694
EST:     GCAGCTTGCAGTATACACTGGTCCAACAG                         TTGGTGGCCTTCTGAATGCTACATTTGGAAATGCAACTGAAATGATCATTG
genomic: GCAGCTTGCAGTATACACTGGTCCAACAGgtatgcctct ... tgaactgcagTTGGTGGCCTTCTGAATGCTACATTTGGAAATGCAACTGAAATGATCATTG
EST: gi|211103676|gb|FL335622.1|FL335622
EST:     GCAGCTTGCAGTATACACTGGTCCCACAG                         G
genomic: GCAGCTTGCAGTATACACTGGTCCAACAGgtatgcctct ... tgaactgcag-
EST: gi|211103676|gb|FL335622.1|FL335622
EST:     GCAGCTTGCAGTATACACTGGTCCCACAG                         G
genomic: GCAGCTTGCAGTATACACTGGTCCAACAGgtatgcctct ... tgaactgcag-
EST: gi|211203502|gb|FL354146.1|FL354146
EST:     GCAGCTTGCAGTATACACTGGTCCAACAG                         TTGGTGGCCTTCTGAATGCTAACATT-GGAAAATGCA-CTGGAATGATCAT
genomic: GCAGCTTGCAGTATACACTGGTCCAACAGgtatgcctct ... tgaactgcagTTGGTGGCCTTCTGAATGCTA-CATTTGGAAA-TGCAACTGAAATGATCAT
EST: gi|148952030|gb|EC897816.2|EC897816
EST:     GCAGCTTGCAGTATACACTGGTCCAACAG                         TTGGTGGCCTTCTGAATGCTACATTTGGAAATGCAACTGAAATGATCATTG
genomic: GCAGCTTGCAGTATACACTGGTCCAACAGgtatgcctct ... tgaactgcagTTGGTGGCCTTCTGAATGCTACATTTGGAAATGCAACTGAAATGATCATTG
EST: gi|149080754|gb|EE169818.2|EE169818
EST:     GCAGCTTGCAGTATACACTGGTCCAACAG                         TTGGTGGCCTTCTGAATGCTACATTTGGAAATGCAACTGAAATGATCATTG
genomic: GCAGCTTGCAGTATACACTGGTCCAACAGgtatgcctct ... tgaactgcagTTGGTGGCCTTCTGAATGCTACATTTGGAAATGCAACTGAAATGATCATTG
EST: gi|211019237|gb|FL365611.1|FL365611
EST:     GCAGCTTGCAGTATACACTGGTCCCACAG                         TTTGGTGGCCTTCTGAATGCTACATTTGGAAATGCAACTGAAATGATCATT
genomic: GCAGCTTGCAGTATACACTGGTCCAACAGgtatgcctct ... tgaactgcagTT-GGTGGCCTTCTGAATGCTACATTTGGAAATGCAACTGAAATGATCATT
EST: gi|149075868|gb|EE164419.2|EE164419
EST:     GCAGCTTGCAGTATACACTGGTCCAACAG                         TTGGTGGCCTTCTGAATGCTACATTTGGAAATGCAACTGAAATGATCATTG
genomic: GCAGCTTGCAGTATACACTGGTCCAACAGgtatgcctct ... tgaactgcagTTGGTGGCCTTCTGAATGCTACATTTGGAAATGCAACTGAAATGATCATTG