1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGACTGCCTTCCGGATGATGGTGGCTTAATGAGAAGTTCATCTGGAATCCTTAGCCTCTCTGAGGAACTCCAGCGTGCTCTTGACAGGCTACCAGAGAAGgtatgatagatccaacttgcccttttgtttccattgaaccccagctttcagcaacttttggttaaggatatactacctccgttctcgaatatttgttgtc...
species | Zea mays |
transcript | GRMZM2G142913_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAGCCTTTCTGAGGAACTCCAGCGTGCTTTTGACCAGGCTACCAGAGAAG GTAGCAGCTGAAGGGATAAAAGCCCTTTATGTCAGTCATACACTCTATTAGEST: gi|88754771|gb|DY538912.1|DY538912
genomic: TAGCCTCTCTGAGGAACTCCAGCGTGCTCTTGA-CAGGCTACCAGAGAAGgtatgataga ... atacaaacagGTAGCAGCTGAAGCGAT-AAAGACCTTTATGTCAGTCATACACTCTA-TAG
EST: TAGCCTTTCTGAGGGAACTCCAGCGGGCTCTTGACAGGCTCCCAGAGAAG GTAGCAGGTGAAGCGATAAAGACCTTTATGTCAGTCATACCCTCTATAGTTEST: gi|6020343|gb|AW065271.1|AW065271
genomic: TAGCCTCTCTGA-GGAACTCCAGCGTGCTCTTGACAGGCTACCAGAGAAGgtatgataga ... atacaaacagGTAGCAGCTGAAGCGATAAAGACCTTTATGTCAGTCATACACTCTATAGTT
EST: GGAACTCCAGCGTGCTCTTGACAGGCTACCAGAGAAG GTAGCAGCTGAAGCGATAAAGACCTTTATGTCAGTCATACACTCTATAGTTEST: gi|78021926|gb|DV490313.1|DV490313
genomic: GGAACTCCAGCGTGCTCTTGACAGGCTACCAGAGAAGgtatgataga ... atacaaacagGTAGCAGCTGAAGCGATAAAGACCTTTATGTCAGTCATACACTCTATAGTT
EST: GCTACCAGAGAAG GTAGCAGCTGAAGCGATAAAGACCTTTATGTCAGTCATACACTCTATAGTTEST: gi|31364139|gb|CD448494.1|CD448494
genomic: GCTACCAGAGAAGgtatgataga ... atacaaacagGTAGCAGCTGAAGCGATAAAGACCTTTATGTCAGTCATACACTCTATAGTT
EST: TCCAGCGTGCTC-TGACAGGCTACCAGAGAAG GTAGCAGCTGAAGCGATAAAGACCTTTATGTCAGTCATACACTCTATAGTTEST: gi|31364632|gb|CD448987.1|CD448987
genomic: TCCAGCGTGCTCTTGACAGGCTACCAGAGAAGgtatgataga ... atacaaacagGTAGCAGCTGAAGCGATAAAGACCTTTATGTCAGTCATACACTCTATAGTT
EST: TTAGCCTCTCTGAGGAACTCCAGCGTGCTCTTGACAGGCTACCAGAGAAG GTAGCAGCTGAAGCGATAAAGACCTTTATGTCAGTCATACACTCTATAGTTEST: gi|67033194|gb|CO461943.1|CO461943
genomic: TTAGCCTCTCTGAGGAACTCCAGCGTGCTCTTGACAGGCTACCAGAGAAGgtatgataga ... atacaaacagGTAGCAGCTGAAGCGATAAAGACCTTTATGTCAGTCATACACTCTATAGTT
EST: TTAGCCTCTCTGAGGAACTCCAGCGTGCTCTTGACAGGCTACCAGAGAAG GTAGCAGCTGAAGCGATAAAGACCTTTATGTCAGTCATACACTCTATAGTT
genomic: TTAGCCTCTCTGAGGAACTCCAGCGTGCTCTTGACAGGCTACCAGAGAAGgtatgataga ... atacaaacagGTAGCAGCTGAAGCGATAAAGACCTTTATGTCAGTCATACACTCTATAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACTGCCTTCCGGATGATGGTGGCTTAATGAGAAGTTCATCTGGAATCCTTAGCCTCTCTGAGGAACTCCAGCGTGCTCTTGACAGGCTACCAGAGAAGgtatgatagatccaacttgcccttttgtttccattgaaccccagctttcagcaacttttggttaaggatatactacctccgttctcgaatatttgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccagc