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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGGAACTTGGTTTTCAGTCATCTACCAATGGATTATCAGGTGCTGCACCATCAAGGACTGATTCTCAATCGCCGCGTCCATCCAATAGCATACATgtaaatccaaaatatttggaagcgaggcagcagctcaatcaaccaactaaggcaagatattctttctcaagttatgttgatacacctgttcattcctttg...

Basic information

species Zea mays
transcript GRMZM2G142168_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G142168_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g39270.1 (Oryza sativa), 5'ss of exon 3
TGAGAAGGAACTTGGTTTTCAGTCATCTACCAATGGATTATCAGGTGCTGCACCATCAAGGACTGATTCTCAATCGCCGCGTCCATCCAATAGCATACATgtaaatccaaaatatttggaagcgaggcagcagctcaatcaaccaactaaggcaagata----ttctttctcaagttatgttgatacacctgttcattcctttg-----------------------------------------------
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---------------------------------------------------ACCATCAAAGCCTGATTCTCAATCCAATCGTCCATCCCACAGCATTCATGTGAACCCAAAATATTTGGAAGCAAGGCAGCAGCTCCAGCAACCAAATAAGgcaagccaacttctttttttttttttttgtagatgtagctattcaatgctcttgtcatcctgagtatcgtatcaagactgatagatattgctcccattga