1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCACGCCGCTGCACCTCGCCGCCAGGCAGGGCCGCTCCGCCTGCGTGCAGGTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGGgtagggtgctctctgtcttgcctgcgcgcgcggtgggtcggtctcctcttgctcagtcatccatgtatgattgattgatcgctgtccgtcgccgctgcag
species | Zea mays |
transcript | GRMZM2G141922_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGG GTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAACCTGGAEST: gi|87153855|gb|DY398644.1|DY398644
genomic: GTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGGgtagggtgct ... gccgctgcagGTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAACCTGGA
EST: GTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGG GTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAACCTGGAEST: gi|71435966|gb|DR817016.1|DR817016
genomic: GTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGGgtagggtgct ... gccgctgcagGTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAACCTGGA
EST: GTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGG GTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAACCTGGAEST: gi|76284382|gb|DV023950.1|DV023950
genomic: GTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGGgtagggtgct ... gccgctgcagGTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAACCTGGA
EST: GTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGG GTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAACCTGGAEST: gi|91869237|gb|EB400304.1|EB400304
genomic: GTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGGgtagggtgct ... gccgctgcagGTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAACCTGGA
EST: GTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGG GTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAACCTGGAEST: gi|19057993|gb|BM736660.1|BM736660
genomic: GTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGGgtagggtgct ... gccgctgcagGTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAACCTGGA
EST: GTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGG GTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAACCTGGA
genomic: GTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGGgtagggtgct ... gccgctgcagGTTCCCCGGCAGCACGTCGCTGCATCTGGCCGCTCGAAGCGGGAACCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACGCCGCTGCACCTCGCCGCCAGGCAGGGCCGCTCCGCCTGCGTGCAGGTGCTGCTGGAGAACGGCGCCATTGTCTCCGCCCTCACCGGCTCCTACGGgtagggtgctctctgtcttgcctgcgcgcgcggtgggtcggtctcctcttgctcagtcatccatgtatgattgattgatcgctgtccgtcgccgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA