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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTACCGTTTTTTCCTGAACAAGGAGTATGGAAGCCTATTTTCGTCTCTAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCTGTTGTGGAAAAGgtgctatacgttcacttatctaatcactgaactgatacctagcgaatgatctgacacataatgtacctttgtcag

Basic information

species Zea mays
transcript GRMZM2G141216_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141216_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g07390.1 (Oryza sativa), 5'ss of exon 5
GTGGTACCGTTTTTTCCTGAACAAGGAGTATGGAAGCCTATTTTCGTCTCTAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCTGTTGTGGAAAAGgtgctatacgttcacttatctaatcactgaactgatacctagcgaatgatctgacacataatgtacctttgtcag
 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||||||||| |||||||||||||| || ||  ||| ||||| || |  |  ||  ||||| ||| |  |  |   || |    |||  | |||||||
ATGGTACCGATTTTTCCTGAACAAGGAGTATGGAAGCCTATTTTCGTCTCTAACCACTGGATTATACCTTACTTTCAAGTTGACATCAGTTGTGGAAAAGgtactgtaacttcccttatttagtttcgtaagggatacttagtgcctcctaaaactccagctgtttccttgtcag

upper sequence: GRMZM2G141216_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv08s0056g00440.t01 (Vitis vinifera), 5'ss of exon 5
GTGGTACCGTTTTTTCCTGAACAAGGAGTATGGAAGCCTATTTTCGTCTCTAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCTGTTGTGGAAAAGgtgctatacgttc---acttatctaatcactgaactgataccta-gcgaatgatctgacacataatgtacctttgtcag------------------------------------------------------------------------------------------------
 ||||| ||||||||| ||||||| || ||||| ||||||||||| || ||||  || || |||||| | ||||||||| | || |||||||| || |||||   ||    ||   |  ||  || ||  || | |||| |||  |    || | |  |      | |   ||| |                                                                                                   
CTGGTATCGTTTTTTCTTGAACAAAGAATATGGGAGCCTATTTTCATCACTAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgttctcttgatgtaaatattctatggattgatgcctctgtttctgcttttgctttgggtctttttttcttcctaatttttaatcctcctcatgaagattaacttcttggttctgtggatcttatgcttatttttttcctccctctctaccttgattggtgatgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74237584|gb|DT645498.1|DT645498
EST:     TAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCTGTTGTGGAAAAG                         GTTCAGTCTTTTTTGACGGCATTGAGAGCATTATCTCATAAAGACTTCCAT
genomic: TAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCTGTTGTGGAAAAGgtgctatacg ... cctttgtcagGTTCAGTCTTTTTTGACGGCATTGAGAGCATTATCTCATAAAGACTTCCAT