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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATATCAGGCACAAGAAGTCAGCGTTGGATCCCCATTGAACACCGTACCACCTGGCCATCTCAGGCTAGGCAAAACTCAACAGAACTGGACATACATGgtaagtatttgactaaataatacaattgaaaaaacaagcaaacaaatcaacgaaatttaaaatatgttagtgtcttaatgttcaaatgcttgtctgtgttacattaagaaccctctaattcaacag

Basic information

species Zea mays
transcript GRMZM2G140893_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G140893_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g51860.1 (Oryza sativa), 5'ss of exon 5
TGCATATCAGGCACAAGAAGTCAGCGTTGGATCCCCATTGAACACCGTACCACCTGGCCATCTCAGGCTAGGCAAAACTCAACAGAACTGGACATACATGgtaagtatttgactaaataatacaattgaaaaaacaagcaaacaaatcaacgaaatttaaaatatgttagtgtc-ttaatgttc---aaatgcttgtctgtgttacattaagaaccctctaattcaacag
|||||| |||| |||||||||||||| |||||  |||||||||| || || || ||||| |||||| |||||   |||||||||||||| || ||||||||||||| |  | ||||||   ||  | || ||||  | |||||| | | || | |   | |||||| |   | | | ||| ||    || || || ||||  ||    | ||                  
TGCATAGCAGGAACAAGAAGTCAGCGATGGATTTCCATTGAACATCGCACTACATGGCCTTCTCAGTCTAGGTTGAACTCAACAGAACTTGATATACATGgtaagtgtcagtctaaatgcaac--tggagaaaaataacaaacagaactac-agacaaacaatatggtgaagacatgaatatttctaaattgtttctctgccttgttgttag------------------