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AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAGgtaaaagctctctcttcttgaacactctttgtttgtttggagcatgagtactgggagtattctattaagtgctaactctatagcgagttcgtaagatagc...
species | Zea mays |
transcript | GRMZM2G140689_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAG CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAEST: gi|19770099|gb|BQ034820.1|BQ034820
genomic: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAGgtaaaagctc ... tacgtggcagCACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATA
EST: CACACAAGGGAACCTATGCTGATGACTGCATTG-GGAGAGGGTCACTCAG CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAEST: gi|211091999|gb|FL476412.1|FL476412
genomic: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAGgtaaaagctc ... tacgtggcagCACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATA
EST: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAG CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAEST: gi|19436894|gb|BM953304.1|BM953304
genomic: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAGgtaaaagctc ... tacgtggcagCACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATA
EST: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAG CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAEST: gi|37383195|gb|CF628588.1|CF628588
genomic: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAGgtaaaagctc ... tacgtggcagCACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATA
EST: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAG CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAEST: gi|19057702|gb|BM736369.1|BM736369
genomic: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAGgtaaaagctc ... tacgtggcagCACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATA
EST: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAG CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAEST: gi|78083854|gb|DV512247.1|DV512247
genomic: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAGgtaaaagctc ... tacgtggcagCACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATA
EST: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAG CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAEST: gi|19436893|gb|BM953303.1|BM953303
genomic: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAGgtaaaagctc ... tacgtggcagCACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATA
EST: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAG CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAEST: gi|5649962|gb|AI920322.1|AI920322
genomic: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAGgtaaaagctc ... tacgtggcagCACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATA
EST: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAG CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAEST: gi|19057549|gb|BM736231.1|BM736231
genomic: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAGgtaaaagctc ... tacgtggcagCACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATA
EST: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAG CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATA
genomic: CACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAGgtaaaagctc ... tacgtggcagCACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAGgtaaaagctctctcttcttgaacactctttgtttgtttggagcatgagtactgggagtattctattaagtgctaactctatagcgagttcgtaagatagc
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctctctc