1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGCCCTAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAGgtaggtgtttgatatcaacaaagaaatcttgaatgcaatttgtttatgatactgagagggtacaaaatttcag
species | Zea mays |
transcript | GRMZM2G139643_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAG ATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGAEST: gi|91872857|gb|EB402814.1|EB402814
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAGgtaggtgttt ... aaaatttcagATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGA
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAG ATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGAEST: gi|148951116|gb|EC896788.2|EC896788
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAGgtaggtgttt ... aaaatttcagATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGA
EST: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAG ATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGA
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAGgtaggtgttt ... aaaatttcagATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGCCCTAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAGgtaggtgtttgatatcaacaaagaaatcttgaatgcaatttgtttatgatactgagagggtacaaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG