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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCTATGACAAGGAGGAGAAGGCGGCTAGAGCTTACGACCTCGCCGCGCTCAAGTACTGGGGGCCTACAACCACGACCAACTTCCCGgtaaagagaactcaaagtcaatctcgggcggcaacacatatttgctgcgagagatggctagctttacctgaatgatccatgcatgcatggcgtag

Basic information

species Zea mays
transcript GRMZM2G139082_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139082_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g44750.1 (Oryza sativa), 5'ss of exon 5
GAGGCTATGACAAGGAGGAGAAGGCGGCTAGAGCTTACGACCTCGCCGCGCTCAAGTACTGGGGGCCTACAACCACGACCAACTTCCCGgtaaaga---gaactcaaagtcaatctcgggcggcaacacatatttgctgcgagagatggctagctttacctgaatgatccatgcatgcatg-gcgtag---
|||| ||||| |||||||||||||| || |||||||||||||||||||| || ||||||||||| || || |||||||| |||||||| ||||  |   |     | ||||||  |      || |  |  ||    |   | |     | | ||||||    |||   |||||||| ||| || ||    
GAGGTTATGATAAGGAGGAGAAGGCCGCAAGAGCTTACGACCTCGCCGCCCTAAAGTACTGGGGTCCAACCACCACGACGAACTTCCCTgtaagtacttgttgcaacagtcaacttattattgccagccccatcaattaatacattattcgatctttacacatatgg--catgcatgtatgtgcttatcct

upper sequence: GRMZM2G139082_T02 (Zea mays), 5'ss of exon 5
lower sequence: EFJ17692 (Selaginella moellendorffii), 5'ss of exon 2
GAGGCTATGACAAGGAGGAGAAGGCGGCTAGAGCTTACGACCTCGCCGCGCTCAAGTACTGGGGGCCTACAACCACGACCAACTTCCCGgtaaagagaactcaaagtcaatctcgggcggcaacacatatttgctgcgagagatggctagctttacctgaatg-atccatgcatgcatggcgtag
| || |||||   |||||||||||| || ||||||||||| || || || |||||||||||||||||||| || || || ||||| |||||||   ||||| || ||        | |  |   |  |  || ||  |  || |  |    |||  |||  ||  |  | |              
GGGGGTATGATGCGGAGGAGAAGGCAGCAAGAGCTTACGATCTGGCAGCTCTCAAGTACTGGGGGCCTACGACAACTACAAACTTTCCGgtaa---gaact-aatgt--------gacaacg-taagttctttctttgcaagctcacagatttt--ctggttgtgttgaag--------------

upper sequence: GRMZM2G139082_T02 (Zea mays), 5'ss of exon 5
lower sequence: EFJ16224 (Selaginella moellendorffii), 5'ss of exon 2
GAGGCTATGACAAGGAGGAGAAGGCGGCTAGAGCTTACGACCTCGCCGCGCTCAAGTACTGGGGGCCTACAACCACGACCAACTTCCCGgtaaagagaactcaaagtcaatctcgggcggcaacacatatttgctgcgagagatggctagctttacctgaatg-atccatgcatgcatggcgtag
| || |||||   |||||||||||| || ||||||||||| || || || |||||||||||||||||||| || || || ||||| |||||||   ||||| || ||        | |  |   |  | ||| ||  |  || |  |    |||  |||  ||  |  | |              
GGGGATATGATGCGGAGGAGAAGGCAGCAAGAGCTTACGATCTGGCAGCTCTCAAGTACTGGGGGCCTACGACAACTACAAACTTTCCGgtaa---gaact-aatgt--------gacaacg-taagttttttctttgcaagctcacagatttt--ctggttgtgttgaag--------------