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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAGGAAGCAAGACTTGTGATGTTAATTCTGGTCACAAATCTTCTCAGTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAATgtaatctgctgatggcctgataccgaataatagttgaattcaaactgtcgactttgagttggtgctaatttttcagtttgtctttgtag

Basic information

species Zea mays
transcript GRMZM2G138425_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94480225|gb|EB709183.1|EB709183
EST:     GTCAGTTTCATGGGGAAAAGAACCTAGCGAACGGGGAGCTCGTTCTGAAT                         GCTGCAACGGGGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAG
genomic: GTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAATgtaatctgct ... gtctttgtagGCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAG
EST: gi|78108347|gb|DV526765.1|DV526765
EST:     GTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAAT                         GCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAG
genomic: GTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAATgtaatctgct ... gtctttgtagGCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAG
EST: gi|50337951|gb|CO533077.1|CO533077
EST:     GTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAAT                         GCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAG
genomic: GTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAATgtaatctgct ... gtctttgtagGCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAG
EST: gi|211363226|gb|FL385763.1|FL385763
EST:     GTCAGTTTCATCTGGAAATGAACCTAGCGAACAGGGAGCTCGTTCTGAAT                         GCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAG
genomic: GTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAATgtaatctgct ... gtctttgtagGCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAG
EST: gi|78022366|gb|DV490753.1|DV490753
EST:     GTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAAT                         GCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAG
genomic: GTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAATgtaatctgct ... gtctttgtagGCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAG
EST: gi|211068522|gb|FL399012.1|FL399012
EST:     GTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAAT                         GCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCA
genomic: GTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAATgtaatctgct ... gtctttgtagGCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCA
EST: gi|50337952|gb|CO533078.1|CO533078
EST:     GTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAAT                         GCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAG
genomic: GTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAATgtaatctgct ... gtctttgtagGCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGAAGGAAGCAAGACTTGTGATGTTAATTCTGGTCACAAATCTTCTCAGTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCTGAATgtaatctgctgatggcctgataccgaataatagttgaattcaaactgtcgactttgagttggtgctaatttttcagtttgtctttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT