Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTTCTGAAGCCAAGCTTGCGCATTGTTTCTCATCAGCCTAGTGACTCTGGAAAACATGCCGGAAATGCTTCTCATTCTGATGGTTCCAAGAGTCAAgtatggctgcccaaattgaacatttactatatgtatggtcactaatttgttgcccggtatttgggtgtagtgattcttttttttcgtttttgcag

Basic information

species Zea mays
transcript GRMZM2G138349_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138349_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g10480.3 (Oryza sativa), 5'ss of exon 7
GGAATTTCTGAAGCCAAGCTTGCGCATTGTTTCTCATCAGCCTAGTGACTCTGGAAAACATGCCGGAAATGCTTCTCATTCTGATGGTTCCAAGAGTCAAgtatg----gctgccc--aaattgaacatt-tactatatg-tatggtcactaatttgttgcccggtatttgggtgtagtgattcttttttttcgtt---tttgcag
 || |||||  |||||||| | || ||||||||||||||| |||| ||||| || |||||||| || | ||| || |||||||   ||||||||||  ||||| |     ||| ||  ||| || | |||  | | | |  ||   |   ||   ||||   ||    || | |  |    |  |  |      ||   |||||||
AGAGTTTCTTGAGCCAAGCCTACGGATTGTTTCTCATCAGTCTAGCGACTCCGGGAAACATGCAGGCAGTGCCTCCCATTCTGTCAGTTCCAAGAGCGAAgtaggcagcactgtcctaaaactgcaaattgcattttgttctaccttacttagcatgttctgcgactcttagattcaaatttagtaatccccgatttgatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211245510|gb|FK953342.1|FK953342
EST:     CT-GAAAACATGCCGGAAATGCTTCTCATTCTGATGGTTCCAAGAGTCAA                         GTCGGCATGATCGAGTTCATTGGAATATTGAATGTCAAGGTGATTGGAGGC
genomic: CTGGAAAACATGCCGGAAATGCTTCTCATTCTGATGGTTCCAAGAGTCAAgtatggctgc ... gtttttgcagGTCGGCATGATCGAGTTCATTGGAATATTGAATGTCAAGGTGATTGGAGGC