Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAACAAGGTTGCTATAGTGCGATGTGTGTGGAGGCAAGGTCAAGGGAATGTTGCTATTGGTGTATTGACGCCAAACATTTCATCAGTGAACAATATCgtaagtatcatattcatcccattaacatttgaaagctttgatgaatgctcaatcagttcttcactatatgctggcag

Basic information

species Zea mays
transcript GRMZM2G137968_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137968_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g63920.1 (Oryza sativa), 5'ss of exon 7
AATGAACAAGGTTGCTATAGTGCGATGTGTGTGGAGGCAAGGTCAAGGGAATGTTGCTATTGGTGTATTGACGCCAAACATTTCATCAGTGAACAATATCgtaagtatcatattca-tcccat-taacatttgaaagctt----tgatga------atgctcaatcagttcttca-----ctatatgctggcag
||||||||||||||| ||  | ||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||  || ||| | ||| |||   |||| | || ||  | | |  || | | ||    ||||||      ||| |||| || |||||       |  | | |  ||||
AATGAACAAGGTTGCAATTTTACGATGCGTGTGGAGGCAAGGTCAAGGGAATGTTGCTTTGGGTGTATTGACACCAAACATATCATCAGCAAAAAATGTTgtatgtactttatttactcacaccttatacctgtaggattcgtctgatgattgcatatgttcaagcaattctttttttttccttttccctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934127|gb|CF038939.1|CF038939
EST:     ATGTTGCTATTGGTGTATTGACGCCAAACATTTCATCAGTGAACAATATC                         CAAGATTCCTTTTACTTCAATGTGCTCCCATTTGCTGAGGACATCAGAGAG
genomic: ATGTTGCTATTGGTGTATTGACGCCAAACATTTCATCAGTGAACAATATCgtaagtatca ... atgctggcagCAAGATTCATTTTACTTCAATGTGCTCCCATTTGCTGAGGACATCAGAGAG
EST: gi|32934920|gb|CF039732.1|CF039732
EST:     ATGTTGCTATTGGTGTATTGACGCCAAACATTTCATCAGTGAACAATATC                         CAAGATTCCTTTTACTTCAATGTGCTCCCATTTGCTGAGGACATCAGAGAG
genomic: ATGTTGCTATTGGTGTATTGACGCCAAACATTTCATCAGTGAACAATATCgtaagtatca ... atgctggcagCAAGATTCATTTTACTTCAATGTGCTCCCATTTGCTGAGGACATCAGAGAG
EST: gi|32944529|gb|CF049348.1|CF049348
EST:     ATGTTGCTATTGGTGTATTGACGCCAAACATTTCATCAGTGAACAATATC                         CAAGATTCCTTTTACTTCAATGTGCTCCCATTTGCTGAGGACATCAGAGAG
genomic: ATGTTGCTATTGGTGTATTGACGCCAAACATTTCATCAGTGAACAATATCgtaagtatca ... atgctggcagCAAGATTCATTTTACTTCAATGTGCTCCCATTTGCTGAGGACATCAGAGAG