1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATTCATGCTCTTGTTAGCAGTCTTTTGTACAAACTCGATAAATATACATGCTGGTCTAAATGGACTTGAAGTTGGGCAGACTATTGTTATATCTGCTGCGgtataaacaaaatatattccttatgtgacatacatgaattttgcataccactcatgtcttgttggcgtgtggttgtggttttttccag
species | Zea mays |
transcript | GRMZM2G137707_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGGTCTAAATGGACTTGAAGTTGGGCAGACTATTGTTATATCTGCTGCG GTTTTGATACATAATGTAATGCGCATAGCATCTTCTACAGATATCGAAACTEST: gi|33093800|gb|CF053794.1|CF053794
genomic: CTGGTCTAAATGGACTTGAAGTTGGGCAGACTATTGTTATATCTGCTGCGgtataaacaa ... ttttttccagGTTTTGATACATAATGTAATGCGCATAGCATCTTCTACAGATATCGAAACT
EST: CTGGTCTAAATGGACTTGAAGTTGGGCAGACTATTGTTATATCTGCTGCG GTTTTGATACATAATGTAATGCGCATAGCATCTTCTACAGATATCGAAACTEST: gi|14204187|gb|BG837864.1|BG837864
genomic: CTGGTCTAAATGGACTTGAAGTTGGGCAGACTATTGTTATATCTGCTGCGgtataaacaa ... ttttttccagGTTTTGATACATAATGTAATGCGCATAGCATCTTCTACAGATATCGAAACT
EST: CTGGTCTAAATGGACTTGAAGTTGGGCAGACTATTGTTATATCTGCTGCG GTTTTGATACATAATGTAATGCGCATAGCATCTTCTACAGATATCGAAACT
genomic: CTGGTCTAAATGGACTTGAAGTTGGGCAGACTATTGTTATATCTGCTGCGgtataaacaa ... ttttttccagGTTTTGATACATAATGTAATGCGCATAGCATCTTCTACAGATATCGAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCATGCTCTTGTTAGCAGTCTTTTGTACAAACTCGATAAATATACATGCTGGTCTAAATGGACTTGAAGTTGGGCAGACTATTGTTATATCTGCTGCGgtataaacaaaatatattccttatgtgacatacatgaattttgcataccactcatgtcttgttggcgtgtggttgtggttttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC