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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgagcaaatatctccacatttcttttcctgtcgtacctgaagcattagtggttacttgttaggccttgttcgtttgtgtcggattgcacccgga...

Basic information

species Zea mays
transcript GRMZM2G137528_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgagcaaatatctccacatttcttttcctgtcgtacctgaagcattagtggttacttgttaggcc-----ttgttcgtttgtgtcggattgcacccgga-----------------------------
|||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||| ||||| |||||||| || |||||||||||||||||||||||  ||||||||| ||  ||  | ||||| |  | | ||     |||||||| ||| |     |  |  |     || | | | ||       |||     | |                             
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCCGAGTTAGTTCAGAAGTACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgagcaaaaataccctgagttcttctattatagtg---aaagcattattggcttgcaatctgaactatagttctacatatgcactctgttgtcagtgtaggcttaattgtttggttaacatattacag

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G24000.1 (Glycine max), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgt--aggctgagcaaatatctccacatttctttt-cctgtcgtacctgaa-gcattagtggttacttgttaggccttgttcgtt-tgtgtcggattgcacccgga
| |||||||| || |||||||||||||||||||||||||| |||||||| || ||||| ||||||||  | |||||  ||||||| ||||||||||||||||  |  ||   ||   | || |   | ||  ||  |||| |   |||   ||  ||      |   |   ||       | || | |    |  | ||      
ATACTGACTGTACATTCATCAGGGTGTCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctcttcactcagcttcctctatccattatctgttgattctgtttgccctaaaccaaaacagaagggataaaaacattgtcttcttggcttcat-----

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA07G00420.1 (Glycine max), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgagcaaatat---ctccacatttcttttcctgtcgtacctgaagcattagtggttacttgttaggccttgttcgtttgtgtcggattgcacccgga
| |||||||| || ||||||||||||||||||||||| || |||||||| || ||||| ||||||||  | |||||  ||||||| ||||||||||||||||    |      |  |    ||| |  ||| ||  |||| |   |||      |       |      |||  |          ||||   |||    |   
ATACTGACTGTACATTCATCAGGGTGTCTGGTTCTGAGTTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctctttacttggcttcctctattcattatctgttgattctgtttgccttacaccaaaacagaagggataaa--aacaatgtcttcttggcttcat-

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT5G20000.1 (Arabidopsis thaliana), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgagcaaatatctccacatttctt-ttcctgtcgtacctgaagcattagtggttacttgttaggccttgttcgtttgtgtcggattgcacccgga---
|||||||||| || |||||||| || |||||||||||  |||| ||||| || ||||| ||||||||  | |||||  | ||||| ||||| ||||| ||||    ||  ||      |||  ||||  | || |   | |     |||   |||     |   | | |  ||| ||     |       ||  ||  |     
ACACTGACTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTGGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGgt---ttgtacatgctagtccttatttaatatttcaagcatggtaaaagtggtaggttggaaaagatggaactt-ttgacacgataaatcttttacatgcccgt

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgagcaaatatc-tccacatttcttttcctgtcgtacctgaagcattagtggtt-acttgttaggccttgttcgtttgtgtcggattgcacccgga-----------------------------------------------------------------------------------------------------
|||||||||| ||||| || ||||| ||||| ||||| || ||||||||||||||||||||||| || || |||||| | ||||| ||||||||||| ||||  | | |  |  | |  |  | |       |  ||    ||||  || |||  |  || |||  | ||    | |   ||| | |   |   | || ||                                                                                                      
ACACTGACTGTACCTTTATAAGGGTTTCTGGCTCTGAGTTAGTTCAGAAGTATATTGGTGAAGGGTCTCGAATGGTTAGAGAACTGTTTGTTATGGCAAGgtttgtttaatatctttagtggaaaccatgacttgtgatacacctagaggatttatttttcactcataagataatat---tttatatgttacctctcctgggtaattgtttagagtcacatttttttcctgggttattgaattttgttttaaatctcccttttatcttgtccttatggtctcttctctgctgctttattacag

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgagcaaatatctccacatttcttttcctgtc-gtacctgaa-gcattagtggttacttgttaggccttgttcgtttgtgtcggattgcacccgga-
| |||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| | |||||| | ||||| || || ||||| ||||    ||   ||     |  | ||    |   | ||  ||   |||| ||   |    | |              | | | | | | || |||   | |   
ATACTGACTGTACTTTCATCAGGGTTTCTGGTTCTGAATTGGTTCAGAAGTACATTGGTGAAGGCTCCAGAATGGTTAGAGAACTTTTCGTGATGGCAAGgt---ttgtataatctctttgaaatgcgatgcacagtttgtgtttgaatgcgccaagtctaaaccaggtttataaatgcttctctttaggtttgatgctgtga

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S245_17V6.1 (Physcomitrella patens), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggc-----tgagcaaatatctccacatttcttttcctgtcgtacctgaagcattagtggttacttgttaggccttgttcgtttgtgtcggattgcacccgga
|||| ||||| || |||||| | || || || |||||  | || |||||||| |||||||||||||| || ||||| ||||| || ||||| ||||| ||||  ||     |   ||||   || || ||   | ||   |  |  |      ||   ||| |    ||  |   ||| |   |  |  |  |  | ||      
ACACAGACTGTACGTTCATCCGAGTTTCAGGATCTGAGCTTGTGCAGAAGTACATTGGTGAAGGTTCACGTATGGTACGGGAGCTGTTTGTAATGGCTAGgtgagcgttctttcacaaaatccttca-atcagtcttttcgctgatcactctacagaggtgctgttatgacaatgcttttcaataaggattcgcattcatt----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211436662|gb|FL284171.1|FL284171
EST:     TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|32941875|gb|CF046694.1|CF046694
EST:     TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATAAAACATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|37393602|gb|CF634067.1|CF634067
EST:     TATATTGGTGAAGGCTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCTGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|6989624|gb|AW447837.1|AW447837
EST:     TATATTGGTGAAGGCTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211434073|gb|FL284166.1|FL284166
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211434072|gb|FL284165.1|FL284165
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|213167947|gb|FM194936.1|FM194936
EST:     -ATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211436664|gb|FL284173.1|FL284173
EST:     TTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211436658|gb|FL284167.1|FL284167
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211487779|gb|FL049400.1|FL049400
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211434071|gb|FL284164.1|FL284164
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211436667|gb|FL284176.1|FL284176
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|19350715|gb|BM895247.1|BM895247
EST:     TACATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211436671|gb|FL284180.1|FL284180
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211436666|gb|FL284175.1|FL284175
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211070411|gb|FL012986.1|FL012986
EST:     TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|67024358|gb|CO453107.1|CO453107
EST:     TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211434065|gb|FL284158.1|FL284158
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211436670|gb|FL284179.1|FL284179
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211436659|gb|FL284168.1|FL284168
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211436668|gb|FL284177.1|FL284177
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|19350732|gb|BM895264.1|BM895264
EST:     TACATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGAGAT
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCG-GAT
EST: gi|211436663|gb|FL284172.1|FL284172
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211434068|gb|FL284161.1|FL284161
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|86471403|gb|DY237773.1|DY237773
EST:     TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|4776454|gb|AI665457.1|AI665457
EST:     TTGTTATGGCCAG                         GGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|60395128|gb|DN227997.1|DN227997
EST:     TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|60352642|gb|DN219615.1|DN219615
EST:     TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|60350071|gb|DN217044.1|DN217044
EST:     ATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|32866277|gb|CF005959.1|CF005959
EST:     TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211434062|gb|FL284155.1|FL284155
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|21391089|gb|BQ529138.1|BQ529138
EST:     AACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATA-TTATGGATGAAATTGACTCTATCGGATC
genomic: AACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211436669|gb|FL284178.1|FL284178
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211431471|gb|FL284150.1|FL284150
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211431470|gb|FL284149.1|FL284149
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211436660|gb|FL284169.1|FL284169
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|149004243|gb|EE039011.2|EE039011
EST:     TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211434059|gb|FL284152.1|FL284152
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|61118809|gb|DN559770.1|DN559770
EST:     TATATTGGTGAAGGCTCCCGGATGGTTCGGGAACTCTTTGTTATGGNCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211436661|gb|FL284170.1|FL284170
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|32933070|gb|CF037882.1|CF037882
EST:     TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211434066|gb|FL284159.1|FL284159
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211487778|gb|FL049399.1|FL049399
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCCTATCGGAT
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTC-TATCGGAT
EST: gi|211434064|gb|FL284157.1|FL284157
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|211434070|gb|FL284163.1|FL284163
EST:     ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: ATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 261

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATCTGCTAGAATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 189

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATCTGCTAGAATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 209

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATCTGCTAGAATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 213

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAATTGGTTCAGAAGTATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATCTGCTAGAATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGT