1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAGTCCCAGAAACGAGAACAGAACCAAATAATGTGAGTTTATCGGCCCGATTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAGgtactttctttcttggcattgaaatgttaattttgcgttgtatggtacatttcaatctactcgcatctcaagattcttttttgaaattttggtgcctctt...
species | Zea mays |
transcript | GRMZM2G135568_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAG TATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|37397489|gb|CF636044.1|CF636044
genomic: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAGgtactttctt ... tgtttttcagTATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: CTCAGCCTGCTCTGGATACAAG TATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|149083910|gb|EE173286.2|EE173286
genomic: CTCAGCCTGCTCTGGATACAAGgtactttctt ... tgtttttcagTATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATAC--- -A-AGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|40337041|gb|CK371111.1|CK371111
genomic: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAGgtactttctt ... tgtttttcagTATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: CTCAGCCTGCTCTGGATAC-AG TATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|71757754|gb|DR955691.1|DR955691
genomic: CTCAGCCTGCTCTGGATACAAGgtactttctt ... tgtttttcagTATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAG TATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|101381892|gb|EB813003.1|EB813003
genomic: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAGgtactttctt ... tgtttttcagTATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TGCCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAG TATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|31349910|gb|CD434267.1|CD434267
genomic: TG-CATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAGgtactttctt ... tgtttttcagTATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAG TATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|149082655|gb|EE171861.2|EE171861
genomic: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAGgtactttctt ... tgtttttcagTATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAG TATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|33103093|gb|CF063053.1|CF063053
genomic: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAGgtactttctt ... tgtttttcagTATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGAATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAG TATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|88748264|gb|DY532405.1|DY532405
genomic: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAGgtactttctt ... tgtttttcagTATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAG TATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAAEST: gi|60339241|gb|DN206214.1|DN206214
genomic: TTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAGgtactttctt ... tgtttttcagTATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
EST: AGCTCAACAGGAAGTGCACACTCAGCTTGCTCTGGATACAAG TATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
genomic: AGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAGgtactttctt ... tgtttttcagTATAGTCCAGAAAGCCTGTAGTGTCATGGAAGTATTGAGGGATGTGCTTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTCCCAGAAACGAGAACAGAACCAAATAATGTGAGTTTATCGGCCCGATTGCATGAAGCTCAACAGGAAGTGCACACTCAGCCTGCTCTGGATACAAGgtactttctttcttggcattgaaatgttaattttgcgttgtatggtacatttcaatctactcgcatctcaagattcttttttgaaattttggtgcctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA