1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCCTCGGGCCGTCTCTGGTCGCCCTCTACAACCCACTCCAACCGGCATGCTCTACCTTGCTCTCGACCATGTTTCTTGGAACTCCAATTTACGTTGGAAGgttcggccctagtcccaactgtattttttatcctctaaattctgagcttgttgacacctgtatttttactcgtttcag
species | Zea mays |
transcript | GRMZM2G134930_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAACTCCAATTTACGTTGGAAG TGTGATTGGGGGACTCTTCATCATCGCTGGCCTTTACCTGGTCACTTGGGCEST: gi|71434593|gb|DR815643.1|DR815643
genomic: GAACTCCAATTTACGTTGGAAGgttcggccct ... ctcgtttcagTGTGATTGGGGGACTCTTCATCATCGCTGGCCTTTACCTGGTCACTTGGGC
EST: TTTACCTTGCTCTCGACCATGTTTCTTGGAACTCCAATTTACGTTGGAAG TGTGATTGGGGGACTCTTCATCATCGCTGGCCTTTACCTGGTCACTTGGGCEST: gi|211326680|gb|FL444699.1|FL444699
genomic: TCTACCTTGCTCTCGACCATGTTTCTTGGAACTCCAATTTACGTTGGAAGgttcggccct ... ctcgtttcagTGTGATTGGGGGACTCTTCATCATCGCTGGCCTTTACCTGGTCACTTGGGC
EST: TCTACCTTGCTCTCGACCATGTTTCTTGGAACTCCAATTTACGTTGGAAG TGTGATTGGGGGACTCTTCATCATCGCTGGCCTTTACCTGGTCACTTGGGCEST: gi|78108291|gb|DV526709.1|DV526709
genomic: TCTACCTTGCTCTCGACCATGTTTCTTGGAACTCCAATTTACGTTGGAAGgttcggccct ... ctcgtttcagTGTGATTGGGGGACTCTTCATCATCGCTGGCCTTTACCTGGTCACTTGGGC
EST: TCTACCTTGCTCTCGACCATGTTTCTTGGAACTCCAATTTACGTTGGAAG TGTGATTGGGGGACTCTTCATCATCGCTGGCCTTTACCTGGTCACTTGGGCEST: gi|88758282|gb|DY542423.1|DY542423
genomic: TCTACCTTGCTCTCGACCATGTTTCTTGGAACTCCAATTTACGTTGGAAGgttcggccct ... ctcgtttcagTGTGATTGGGGGACTCTTCATCATCGCTGGCCTTTACCTGGTCACTTGGGC
EST: TCTACCTTGCTCTCGACCATGTTTCTTGGAACTCCAATTTACGTTGGAAG TGTGATTGGGGGACTCTTCATCATCGCTGGCCTTTACCTGGTCACTTGGGC
genomic: TCTACCTTGCTCTCGACCATGTTTCTTGGAACTCCAATTTACGTTGGAAGgttcggccct ... ctcgtttcagTGTGATTGGGGGACTCTTCATCATCGCTGGCCTTTACCTGGTCACTTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTCGGGCCGTCTCTGGTCGCCCTCTACAACCCACTCCAACCGGCATGCTCTACCTTGCTCTCGACCATGTTTCTTGGAACTCCAATTTACGTTGGAAGgttcggccctagtcccaactgtattttttatcctctaaattctgagcttgttgacacctgtatttttactcgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG