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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACGAACATGATGTTGTATGGTTCTGGTTGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaattgctaaattgctgtttgatatactgtaggttattgctacacaagcatactgcatgctgatgtcggtattaactaatgtaattatttggttgcttgatttgtgcag

Basic information

species Zea mays
transcript GRMZM2G134738_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134738_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g42650.1 (Oryza sativa), 5'ss of exon 5
AGGACGAACATGATGTTGTATGGTTCTGGTTGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaattgctaaattgctgt-ttgatatactgtaggttattgctacacaagcatactgcatgctgatgtcggtattaa-ctaatgtaattatttggttgcttgat-ttgtgcag---------------------------
|||| || |||||||||||||||||||||||||||||||| || ||||||||||| |||||||| || ||||| |||||||||||   ||||  |   |||   | ||  | || | || ||  ||  ||        || || |||  | |  | ||   || ||  | | ||| | |  |    |  | || |  |                            
AGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAACCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGgtaattggaattcgttgtttgacatattactttaatttatgtatttagtaactgtttttattgaatgtagctcacagttccaagctgttttgattctgtaatgttctattgttctttaatggatctttgttgctcgccttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60357675|gb|DN224648.1|DN224648
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|32933852|gb|CF038664.1|CF038664
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAGGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|211038526|gb|FL455206.1|FL455206
EST:     TGAAAAAASMCGASCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|76288217|gb|DV027785.1|DV027785
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|28985245|gb|BQ538397.2|BQ538397
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|18173629|gb|BM349017.1|BM349017
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|67025323|gb|CO454072.1|CO454072
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCT--CAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|18450528|gb|BM428806.1|BM428806
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGCG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|60352817|gb|DN219790.1|DN219790
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|37382992|gb|CF628470.1|CF628470
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|18649503|gb|BM498322.1|BM498322
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|15057046|gb|BI361018.1|BI361018
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|18450555|gb|BM428833.1|BM428833
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTG
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTG
EST: gi|60352341|gb|DN219314.1|DN219314
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|60340144|gb|DN207117.1|DN207117
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|24770192|gb|CA405321.1|CA405321
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|76288216|gb|DV027784.1|DV027784
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|60348157|gb|DN215130.1|DN215130
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|31354094|gb|CD438451.1|CD438451
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|21759837|gb|BQ635378.1|BQ635378
EST:     TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTG                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: TGAAAAAAGACGAGCCGCATGAGTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
EST: gi|37383908|gb|CF628995.1|CF628995
EST:     GTGTCCAGTCTGCTCGCAATAC-TT-T-                         CTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT
genomic: GTGTCCAGTCTGCTCGCAATACTTTGTGgtaatctaaa ... atttgtgcagCTTAAGGTAATTGGTGATGGTGGAGATCCAGATGGCCATGACGATGAAGAT