1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgagcactgttcatcatcccattgtgatacattccatgcttgccagcggcggtcaccaccctctgtttgcacttgttatctgcag
species | Zea mays |
transcript | GRMZM2G134176_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|28911329|gb|BM348372.2|BM348372
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|71311064|gb|DR791846.1|DR791846
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: TTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
genomic: TTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgagcactgttcatcatcccattgtgatacattccatgcttgccagcggcggtcaccaccctctgtttgcacttgttatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA