Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAGgtgcagtttgcatgctccatcagttgaaacttctctgctattttttgtccgcttttgtttctgttgcaacagcttttggttcctgcaacttctgtcatga...

Basic information

species Zea mays
transcript GRMZM2G133959_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133959_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g72870.1 (Oryza sativa), 5'ss of exon 7
GATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAGgtgcagtttg-catgctccatcagttgaaacttct--ctgctattttttgtccgcttttgtttctgttgcaacagcttttggttcctgcaacttctgtcatga
|||   |||| ||| ||||||||||||||| ||||||||||||| ||||||||   || ||  ||| | |   | |  | | |||   ||   | | |   |  || | |    || |||   || |  |   | |   |||        |   
GATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAGgtatggtatggtatgattccatattatatatttccgactaaaactgtggttttgcatatccaacttttg-gtcaaccatacatccgaacaaaagaaagaac--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445213|gb|DR826263.1|DR826263
EST:     ATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAG                         GTTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTG
genomic: ATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAGgtgcagtttg ... atgcatgcagGTTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTG
EST: gi|148930291|gb|EC872790.2|EC872790
EST:     ATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAG                         GTTGATTTCATTGAGCAAGAGC
genomic: ATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAGgtgcagtttg ... atgcatgcagGTTGATTTCATTGAGCAAGAGC
EST: gi|148931157|gb|EC873861.2|EC873861
EST:     ATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAG                         GTTGATTTCATTGAGCAAG
genomic: ATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAGgtgcagtttg ... atgcatgcagGTTGATTTCATTGAGCAAG