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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCACGACCTCTGCCCTTCTCTAGTAATTTCAGAGATGCCACTGTCAGAAGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGAgtatgtatacacaactatttgcttgcaatgactgtctgggcatccataccttaggtcctgggttggactctagccgagttgattaggtggtctgcttagc...

Basic information

species Zea mays
transcript GRMZM2G133757_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133757_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g13694.1 (Oryza sativa), 5'ss of exon 5
CTGCACGACCTCTGCCCTTCTCTAGTAATTTCAGAGATGCCACTGTCAGAAGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGAgtatgtatacac-aactatttgcttgcaatgactgtctgggcatccataccttaggtcctgggttggactctagccga-gttgattaggtggtctgcttagc-------
  |  | ||| | |||   | || ||| ||||||||| || ||||| ||||||||||||||||| ||| || ||| |||||||| |  |  |||||| ||||| |||||| | |||| | | |||| ||||      |||  |||||||     ||| |    ||      | | |   ||| |||| ||   ||  |||         
AGGTGCAACCCCAGCCTAGCACTGGTAGTTTCAGAGAAGCTACTGTTAGAAGTGTTATTCCTGATCCAGATATTTCTCAAAGCTGCACTGATTCATCAGAgtacgtatactccaactttgttcttggaatgtgatgatggatatccataggggtggttcatttttctctcttggtcattgttaattaagtttgctcattatttctatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74237046|gb|DT644960.1|DT644960
EST:     AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGA                         GGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
genomic: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGAgtatgtatac ... ttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
EST: gi|91051391|gb|EB161809.1|EB161809
EST:     AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGA                         GGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
genomic: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGAgtatgtatac ... ttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
EST: gi|76289049|gb|DV028617.1|DV028617
EST:     AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGA                         GGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
genomic: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGAgtatgtatac ... ttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
EST: gi|78110369|gb|DV528781.1|DV528781
EST:     AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGA                         GGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
genomic: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGAgtatgtatac ... ttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
EST: gi|76285618|gb|DV025186.1|DV025186
EST:     AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGA                         GGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA
genomic: AGTGTTATTCCTGACCCATATGTTTTTCAAAGCTTCGGTAGTTCATCGGAgtatgtatac ... ttattcacagGGTGTCCTCAATAATACCAAATAGAGATGACATGGTTGCTACTTTACTTCA