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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTAACAATTTTATTGAGACTCTTCGAGAACGGATGTTTAGGCCATCACTGTCTACCATTATCTCTGAGAATTCAAAgtaggtaatatcttttctttttcaaatgaagtgcctccttgagcattcatgtaacataagtgccagttcagaacaacttatgtcctgatcttaattctttag

Basic information

species Zea mays
transcript GRMZM2G133621_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133621_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g69900.1 (Oryza sativa), 5'ss of exon 5
GTCCTAACAATTTTATTGAGACTCTTCGAGAACGGATGTTTAGGCCATCACTGTCTACCATTATCTCTGAGAATTCAAAgtaggtaatatcttttctttttcaaatgaagtgcctccttgagcattcatgtaacataagtgccagttcagaacaacttatgtcctgatc-ttaattctttag
||||||| | ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||| ||||  ||      | ||  |  ||||||   | ||  ||||||||| |   |||||||| |  |  || |    || |  ||||
GTCCTAATACTTTTATTGAGACTCTTCGAGAGCGGATGTTTAGGCCATCACTATCTACCATTATTTCTGAGAATTCAAAgtaggtaatatccattcctttttcaagttttaggcttttccagcatttcaggaatttaagtgccattgttgaacaactgacttattgctgacaaacttcttag

upper sequence: GRMZM2G133621_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G38140.1 (Glycine max), 5'ss of exon 5
GTCCTAAC---AATTTTATTGAGACTCTTCGAGAACGGATGTTTAGGCCATCACTGTCTACCATTATCTCTGAGAATTCAAAgtaggtaatatcttttctttttcaaatgaagtgcctccttgagcattcatgtaacataagtgccagttcagaacaacttatgtcctgatcttaattctttag-----------------
   | ||    |  || || ||||||||||| || | ||| |||| ||||||  ||||||| |||||  ||||||||||||||||||||||| ||| | || ||       |        |    |    || |||  |   |||| | |   |   | |||| ||  |   |||||||   ||                 
CCTCCAATTCGACATTCATGGAGACTCTTCGCGAGCAGATATTTAAGCCATCTTTGTCTACAATTATTCCTGAGAATTCAAAgtaggtaataccttcttttgttttggctgaacaaaagtt--gcctcaaatttaatttgtttgcctgcttgaagtta-ttatatcaag---ttaattcagcagatagtggcactttccag

upper sequence: GRMZM2G133621_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G01470.1 (Glycine max), 5'ss of exon 4
GTCCTAAC---AATTTTATTGAGACTCTTCGAGAACGGATGTTTAGGCCATCACTGTCTACCATTATCTCTGAGAATTCAAAgtaggtaatatcttttctt-tttcaaatgaa-gtgcctccttgagcattcatgtaacataagtgcc---agtt--cagaacaacttatgtc--ctgatcttaattctttag--
|  | ||    |  || || ||||||||||| || | ||| |||| ||||||  ||||||| |||||  || |||||||||||||||||||| ||| | || ||| |  ||||      |  |     ||| |  |    |  |||     ||||   | | ||| |||  ||  | |||  |    ||||    
GCTCCAATTCGACATTCATGGAGACTCTTCGGGAGCAGATATTTAAGCCATCTTTGTCTACAATTATTCCTCAGAATTCAAAgtaggtaataccttcttttgttttagctgaacaaaagttgtctcagatttaatttgttttcgtgtttggagttgttataccaagttaattcagcagatagtggcactttccag

upper sequence: GRMZM2G133621_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 6
GTCCTAACAATTTTATTGAGACTCTTCGAGAACGGATGTTTAGGCCATCACTGTCTACCATTATCTCTGAGAATTCAAAgtaggtaatatcttttctttt-tcaaatgaagtgcctcct----tgagcattcatg---taacataagtgccagttcagaacaacttatgtcctgatcttaattctttag------------------------------------------------------------------------------------
|||||| ||  || |||||||| ||||||||  |||||||||||||  |  |||| || || ||| | ||||||||||||||||||||||||||  || | |  | | |  ||  |  |    ||  |||| ||    |    || |   |  | |   | ||  | | |  | || || |||| || |                                                                                    
GTCCTAGCACATTCATTGAGACACTTCGAGAGAGGATGTTTAGGCCTGCTTTGTCCACGATCATCCCCGAGAATTCAAAgtaggtaatatctttatttatatttattcatttggtttttcatatggccatttatagcttttactatgaaactatgctacagaatatctttatttatatttattcatttggtttttcaaatggccctttgtatagctttcactatcaaactataatacaattactttcatttaacatatcatggaatctttcag