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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGAGCTCGAGACTTGTCATTTGATGCTCGTGGGTATGCTATTGTCTTTGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAGgtaaagcagttcctttttccaacatatagtgttctttcatcgtacaaaatctttctgatcagatgttctttttcttccatag

Basic information

species Zea mays
transcript GRMZM2G133226_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133226_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g40030.1 (Oryza sativa), 5'ss of exon 5
GCTGGAGCTCGAGACTTGTCATTTGATGCTCGTGGGTATGCTATTGTCTTTGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAGgtaaag---cagttcct-ttttccaacatatagtgttctttcatcgtacaaaatctttctgatcagatgttctttttcttccatag
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GCTGGAGCTCGAGACCTGTCGTTTGATGCTCGTGGGTATGCTATTGTCTTTGTGGCCAACATTACAACAGCTGTTTACCTTGCTACTATAAACCGTATAGgtaacatttcattttcagttttgccacatacaatcccattctaaactacatag-ctttctaaccagcagttttgttttgttt-tag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71440135|gb|DR821185.1|DR821185
EST:     TGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAG                         GAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATG
genomic: TGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAGgtaaagcagt ... tcttccatagGAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATG
EST: gi|148933234|gb|EC876885.2|EC876885
EST:     TGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAG                         GAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATG
genomic: TGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAGgtaaagcagt ... tcttccatagGAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATG
EST: gi|149103657|gb|EE289061.2|EE289061
EST:     TGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAG                         GAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATG
genomic: TGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAGgtaaagcagt ... tcttccatagGAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATG
EST: gi|148947033|gb|EC892330.2|EC892330
EST:     TGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAG                         GAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATG
genomic: TGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAGgtaaagcagt ... tcttccatagGAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATG
EST: gi|91054598|gb|EB165016.1|EB165016
EST:     TGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAG                         GAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATG
genomic: TGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAGgtaaagcagt ... tcttccatagGAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATG
EST: gi|91054599|gb|EB165017.1|EB165017
EST:     TGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAG                         GAAAATCTAGTGGCCCTCA-TAGCTTTGGCCTGAT
genomic: TGTGGCCAACATTACGACAGCCATTTACCTTGCTACTATCAACCGTATAGgtaaagcagt ... tcttccatagGAAAATCTAGTGGCC-TCAATAGCTTTGGCCTGAT