Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattcaatcctgagttgtatattgcgatagatcatgctacaaaacgcttcatttccaagtgatcagtgaccttattttctttctgccgccacag

Basic information

species Zea mays
transcript GRMZM2G133213_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g59930.2 (Oryza sativa), 5'ss of exon 5
GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattcaatcct---gagttgtatattgcgatagatcatgctacaaaacgcttcatttccaagtgatcagtgacct-tattttctttctgccgccacag
|| || ||||  ||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||  |  |||    |||| ||| ||||  |  ||  |||| |||  ||  ||| ||   ||| |  | ||||    ||||| ||| ||    |||||
GGTCGTTTCAGATACCAAGTTGGGCAAGTGAGAGCTTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAAgtaacatatatgcctccaaagttctatgttgcagttaatgttgctgcaag-cgggtcacttagtagttagtactgacaaacattttttttatgttctcacag

upper sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G24510.1 (Glycine max), 5'ss of exon 5
GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattcaatcctgagttgtatattgcgatagatcatgctacaaaacgcttcatttccaagtgatcagtgaccttattttctttctgccgccacag---
|| || ||||  ||| |   ||||||||| ||||||||||||||| | ||||| || |||||||| |||||||||||||| ||  | | ||    |    |     ||  |  |     |      ||    || |      | |  | ||  |  ||       || |   |  | ||   
GGACGTTTCACTTACAAACCTGGCCAAGTTAGGGCATTTGGAATGATTGCTGGGGGCTCAGGCATAACTCCAATGTTTCAGgtg-cgtacatatatataataagctttcaggcactctttttggttaagtttttaagaaagtaatttttagctaagtttaagaagttttatggagaaagtta

upper sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA15G34620.1 (Glycine max), 5'ss of exon 5
GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgta---acattcaatc-ctgagttgtatattgcgatagatcatgctacaaaacgcttcatttccaagtgatcagtgaccttattttctttctgccgccacag-
|| || ||||  ||| |   |||||| |  ||||||||||||||| | ||||| || |||||||| |||||||||||||| |||   ||||  || |  | ||      |||  | |  |  ||   | |||    ||  |  | ||||  | |  ||  || |    |    |       || 
GGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCTGGGGGTTCAGGCATAACTCCAATGTTTCAGgtacgcacatataagcattcaggcactcattttgtttaagtatttaagaaagtaatttttagctaagt--ttaa-gaagttttacggtgaaagttatttaagt

upper sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT5G17770.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattcaatcctgagttgtatattgcgatagatcatgctacaaaacgcttcatttccaagtgatcagtgaccttattttctttctgccgccacag
||  | |||||||| ||    || ||  | ||||||||||||||||| ||||| || |||||||| ||||| ||||| ||||||   |   || |  | |||  | |||  || | |  ||   | ||  |  |   ||  ||  |    || |  || | ||  || ||  |      
GGTAGGTTCAAGTATCAACCAGGTCAGTTTAGGGCATTTGGAATGCTTGCTGGAGGTTCAGGCATCACTCCCATGTTCCAAgta-tgtctgatac--atttgcgt-ttgatatcgtttttgaagccaa-tgtatatgttttaaacgc---gttatatt-tcttaattgtgaag------

upper sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 5
GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaa-cattcaatcctgagttgtatattgcgatagatcatgctacaaaacgcttcatttccaagtgatcagtgaccttattttctttctgccgccacag------------------------------------------
|| || |||| ||| || ||||||||||| ||||||||||| ||||| ||||| || || || ||||| |||||||| |||||||  |||  |      ||| ||||||  | || ||  |  ||  ||  |        |    | |    ||| ||  | |  ||  |   |     |                                          
GGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCTGGAGGTTCTGGAATTACACCAATGTTCCAAgtaagtatttgagaaattgttttatatt-tggtacatgcttttaataagagtgcttgacctgtttcaattttgaactagtatctttcatagagtttaggtgataatgcgtagtggttgttccttttctgcccacaattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71448609|gb|DR829659.1|DR829659
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|148941936|gb|EC886923.2|EC886923
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|149102560|gb|EE287919.2|EE287919
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|76925297|gb|DV170368.1|DV170368
EST:     TTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: TTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|33094787|gb|CF054781.1|CF054781
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|78021300|gb|DV489687.1|DV489687
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32847392|gb|CD987073.1|CD987073
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|211135585|gb|FL028679.1|FL028679
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|50324317|gb|CO519443.1|CO519443
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32939915|gb|CF044734.1|CF044734
EST:     GGGCATTTGGAATGTTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|211135584|gb|FL028678.1|FL028678
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|71762916|gb|DR960853.1|DR960853
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32931398|gb|CF036210.1|CF036210
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCCAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|149037731|gb|EE155393.2|EE155393
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32847563|gb|CD987244.1|CD987244
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|87152328|gb|DY397117.1|DY397117
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|78109074|gb|DV527491.1|DV527491
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|211135583|gb|FL028677.1|FL028677
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|148961502|gb|EE012253.2|EE012253
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|76012143|gb|DT939313.1|DT939313
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|149082026|gb|EE171198.2|EE171198
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32837232|gb|CD976910.1|CD976910
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|110942132|gb|EE162289.1|EE162289
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32858270|gb|CD997951.1|CD997951
EST:     GGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|110222928|gb|EC904826.1|EC904826
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|5871734|gb|AW018205.1|AW018205
EST:     GGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|76291173|gb|DV030741.1|DV030741
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCTTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|60353457|gb|DN220430.1|DN220430
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|71767235|gb|DR965172.1|DR965172
EST:     GGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|78080766|gb|DV509178.1|DV509178
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|67014854|gb|CO443603.1|CO443603
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCANGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCANAG-TTCACTT
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCA-AGGTTCACTT
EST: gi|60395988|gb|DN228858.1|DN228858
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|149081654|gb|EE170805.2|EE170805
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|149080052|gb|EE169070.2|EE169070
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|76291174|gb|DV030742.1|DV030742
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCTTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32856318|gb|CD995999.1|CD995999
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GGTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32926907|gb|CF031719.1|CF031719
EST:     GGGCATTTGGAATGTTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GGTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|19058065|gb|BM736732.1|BM736732
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32836716|gb|CD976394.1|CD976394
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|7162318|gb|AW519925.1|AW519925
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|111189782|gb|EE287918.1|EE287918
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|18965165|gb|BM661428.1|BM661428
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGNTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|149073961|gb|EE162290.2|EE162290
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|93017180|gb|EB642700.1|EB642700
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|110941247|gb|EE161404.1|EE161404
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|50324318|gb|CO519444.1|CO519444
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|10191564|gb|BE761640.1|BE761640
EST:     ATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: ATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|50328082|gb|CO523208.1|CO523208
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32847795|gb|CD987476.1|CD987476
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|148958580|gb|EC904827.2|EC904827
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|93014585|gb|EB640105.1|EB640105
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|149037730|gb|EE155392.2|EE155392
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32930913|gb|CF035725.1|CF035725
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32837750|gb|CD977428.1|CD977428
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|33093863|gb|CF053857.1|CF053857
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|149073131|gb|EE161405.2|EE161405
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|93014408|gb|EB639928.1|EB639928
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|50332760|gb|CO527886.1|CO527886
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32926813|gb|CF031625.1|CF031625
EST:     GGGCATTTGGAATGTTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|91051331|gb|EB161749.1|EB161749
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAAAGCAATTCT
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCT
EST: gi|32941942|gb|CF046761.1|CF046761
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|149080051|gb|EE169069.2|EE169069
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|32925558|gb|CF030370.1|CF030370
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCCATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGTCAACCCCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|9733244|gb|BE511996.1|BE511996
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|211290231|gb|FL387862.1|FL387862
EST:     GGGCATTTGGAATGCTGGTTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|78109073|gb|DV527490.1|DV527490
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|60357354|gb|DN224327.1|DN224327
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|113702377|gb|EE679881.1|EE679881
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|78117350|gb|DV535737.1|DV535737
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCATTTCT
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCT
EST: gi|60397090|gb|DN229909.1|DN229909
EST:     TCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: TCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|18965111|gb|BM661399.1|BM661399
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCA
EST: gi|32926814|gb|CF031626.1|CF031626
EST:     GGGCATTTGGAATGTTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
EST: gi|6056550|gb|AW090940.1|AW090940
EST:     GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA                         GTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA
genomic: GGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 479

GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTAATTTATGCTAATGTCACATATGAAGACATTCTTCTGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 831

GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTAATTTATGCTAATGTCACATATGAAGACATTCTTCTGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 832

GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTAATTTATGCTAATGTCACATATGAAGACATTCTTCTGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 977

GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattca ... gccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTAATTTATGCTAATGTCACATATGAAGACATTCTTCTGAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAAgtaacattcaatcctgagttgtatattgcgatagatcatgctacaaaacgcttcatttccaagtgatcagtgaccttattttctttctgccgccacag

- - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA