Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGAACGGGTACCACCACCGCACCGAGATGAACAAGAAAGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttctgagcttcttgtactaacttgcacaatctgtttacctttgttgctcttgttggttacggattgctgccatttgcag

Basic information

species Zea mays
transcript GRMZM2G132968_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132968_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 5
GTCAGAACGGGTACCACCACCGCACCGAGATGAACAAGAAAGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttctgagcttcttgtacta-acttgcacaatctgtttacctttgttgctcttgttggttacgg-attgctgccatttgcag---------------------------------------
||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||| || || | ||| | ||||| ||| || |||||||||||| | ||| |     |   || || ||  ||||    || || |   | |  ||  |||| | || |  |||||  |  |||||                                         
GTCAGAATGGGTACCACCACCGCACTGAGATGAATAAGAAGGTTTACAAGATCGGCAAGTCTGGCCAGGAAAGCCATGCTGCCTGCACTGAATTTGACAGgtaccaattc-gtctaccagatattacaccagcactccatgattgcaaatctgtcttctgtttgatatgctattgcatctgtttgcgagcgaaacttaaacgatattgtgcttgctcttgcgctcag

upper sequence: GRMZM2G132968_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 5
GTCAGAACGGGTACCACCACCGCACCGAGATGAACAAGAAAGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttctg--------agcttcttgtactaacttgcacaatctgt-ttacctttgttgctcttgttggttacg--gattgctgccatttgcag
||||||| || ||||||||||| || ||| |||||||||| ||||||||| | ||||| |||||| | ||  | |||  |||    || |||||||| |||||    || ||         | ||  || | ||| ||   ||    || ||   |||||   ||    |     |     ||| |  |   | |||
GTCAGAATGGATACCACCACCGAACAGAGTTGAACAAGAAGGTTTACAAGCTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttttgttgattatggttttgtgcaataaatttagcaggaagtattttgtttgtaagtcaaactaacccctctacttgttttctgattcag

upper sequence: GRMZM2G132968_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G36780.1 (Glycine max), 5'ss of exon 5
GTCAGAACGGGTACCACCACCGCACCGAGATGAACAAGAAAGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgt-actatttctgagcttcttgtactaacttgca-caatctgtttacctttgttgctcttgttggttacggattgctgccatttgcag-----------------
||||||| || ||||||||||| || ||| |||||||||| ||||||||| | ||||| |||||| | ||  | |||  |||    || |||||||| |||| | | ||       |  || |  |    ||||  ||  | || | |             ||||||     |       |    |                   
GTCAGAATGGATACCACCACCGAACTGAGTTGAACAAGAAGGTTTACAAGCTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttgtcttcttgattatggttttgtgcagtaaattattgaacagcaggaagtactttggttgtaagtcaaattaaccctctacttgttttctgatccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4646397|gb|AI621727.1|AI621727
EST:     ATCGGCAAGGCTGGACAAGAGACCCTCGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|211272762|gb|FL349910.1|FL349910
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|31362209|gb|CD446566.1|CD446566
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|32838825|gb|CD978506.1|CD978506
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|4966538|gb|AI691394.1|AI691394
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|5468666|gb|AI834457.1|AI834457
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|32165000|gb|CD670318.1|CD670318
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|4804192|gb|AI666058.1|AI666058
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|33103443|gb|CF063403.1|CF063403
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|5005779|gb|AI711841.1|AI711841
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|211283996|gb|FL031550.1|FL031550
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCANCTATGGTATCG
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCA-CTATGGTATCG
EST: gi|67014068|gb|CO442817.1|CO442817
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|21331419|gb|BQ486800.1|BQ486800
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|5739856|gb|AI947546.1|AI947546
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|19351800|gb|BM896332.1|BM896332
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATG
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATG
EST: gi|211237774|gb|FL127834.1|FL127834
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|9953277|gb|BE639860.1|BE639860
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|9794714|gb|BE553022.1|BE553022
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|5915390|gb|AW053031.1|AW053031
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|60357759|gb|DN224732.1|DN224732
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|4217928|gb|AI391924.1|AI391924
EST:     GAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: GAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|5055730|gb|AI734617.1|AI734617
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|60339562|gb|DN206535.1|DN206535
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|33096315|gb|CF056309.1|CF056309
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACACCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|24766979|gb|CA402124.1|CA402124
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|4630564|gb|AI621438.1|AI621438
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|5791453|gb|AI978245.1|AI978245
EST:     ATCGGCAAGGCTGGACAAGAGACCCNCGATGCCTCCNCAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|33104112|gb|CF064072.1|CF064072
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|78543761|gb|DV621259.1|DV621259
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|148940828|gb|EC885657.2|EC885657
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|37380855|gb|CF627269.1|CF627269
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|18167528|gb|BM337367.1|BM337367
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|8665928|gb|BE186744.1|BE186744
EST:     TCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: TCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|24769192|gb|CA404321.1|CA404321
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|37375711|gb|CF624310.1|CF624310
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|78023695|gb|DV492082.1|DV492082
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|5847369|gb|AW000448.1|AW000448
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|9255034|gb|BE345502.1|BE345502
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|32848623|gb|CD988304.1|CD988304
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|19351557|gb|BM896089.1|BM896089
EST:     ATCGGCAAGGCTGGACCAGAGACCCNCGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|60398332|gb|DN231148.1|DN231148
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCC
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCC
EST: gi|60348681|gb|DN215654.1|DN215654
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|4573206|gb|AI438567.2|AI438567
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|4573171|gb|AI438526.2|AI438526
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|37374149|gb|CF623411.1|CF623411
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|9731775|gb|BE510527.1|BE510527
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTAT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTAT
EST: gi|67025188|gb|CO453937.1|CO453937
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|110496435|gb|EE015028.1|EE015028
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|211237775|gb|FL127835.1|FL127835
EST:     AGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: AGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|32848676|gb|CD988357.1|CD988357
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|32943391|gb|CF048210.1|CF048210
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|4966717|gb|AI691573.1|AI691573
EST:     ATCGGCAAGGCTGGACAAGAGACCCNCGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|21987338|gb|BQ778866.1|BQ778866
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGC
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGC
EST: gi|32944768|gb|CF049587.1|CF049587
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|24768701|gb|CA403830.1|CA403830
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|84980280|gb|DW530629.1|DW530629
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACAACACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|5597121|gb|AI891324.1|AI891324
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|14208342|gb|BG842020.1|BG842020
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|60349096|gb|DN216069.1|DN216069
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|60394437|gb|DN227307.1|DN227307
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|32851092|gb|CD990773.1|CD990773
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|211105856|gb|FL434763.1|FL434763
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|5804538|gb|AI979508.1|AI979508
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|30087640|gb|CB885846.1|CB885846
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|71298699|gb|DR785333.1|DR785333
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|5456401|gb|AI834091.1|AI834091
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|213172548|gb|FM192996.1|FM192996
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCC
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCC
EST: gi|33090942|gb|CF050936.1|CF050936
EST:     GAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: GAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|40334211|gb|CK368281.1|CK368281
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|60343060|gb|DN210033.1|DN210033
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|4646352|gb|AI621682.1|AI621682
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|32846255|gb|CD985936.1|CD985936
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCTACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|33101271|gb|CF061231.1|CF061231
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|60348891|gb|DN215864.1|DN215864
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|32848335|gb|CD988016.1|CD988016
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|15312937|gb|BI478472.1|BI478472
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|32942775|gb|CF047594.1|CF047594
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
EST: gi|4967227|gb|AI691907.1|AI691907
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1237

GTCAGAACGGGTACCACCACCGCACCGAGATGAACAAGAAAGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGATGCTGTGTGGGTCCAAAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 846

GTCAGAACGGGTACCACCACCGCACCGAGATGAACAAGAAAGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGATGCTGTGTGGGTCCAAAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 896

GTCAGAACGGGTACCACCACCGCACCGAGATGAACAAGAAAGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGATGCTGTGTGGGTCCAAAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 450

GTCAGAACGGGTACCACCACCGCACCGAGATGAACAAGAAAGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGATGCTGTGTGGGTCCAAAGAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAGAACGGGTACCACCACCGCACCGAGATGAACAAGAAAGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttctgagcttcttgtactaacttgcacaatctgtttacctttgttgctcttgttggttacggattgctgccatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA