1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGATTATGGTTCAAGACAAACTTGAAGCTCTGCAAAATTTGGTTTGATATGGGCGAATATGGTCGCATGAGCAAGgttcttggatcacttatttagttatagtcttcgatgcagtaagtttgtctatattattaaattagattcttactggcag
species | Zea mays |
transcript | GRMZM2G132804_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCTCTGCAAAATTTGGTTTGATATGGGCGAATATGGTCGCATGAGCAAG ATATTGAAGGAACTGCATAAATCTTGCCAAAGGGAAGATGGTTCTGATGATEST: gi|9731371|gb|BE510123.1|BE510123
genomic: AGCTCTGCAAAATTTGGTTTGATATGGGCGAATATGGTCGCATGAGCAAGgttcttggat ... ttactggcagATATTGAAGGAGCTGCATAAATCTTGCCAAAGGGAAGATGGTTCTGATGAT
EST: AGCTCTGCAAAATTTGGTTTGATATGGGCGAATATGGTCGCATGAGCAAG ATATTGAAGGAGTTGCATAAATCTTGCCAAAGGGAAGATGGTTCTGATGATEST: gi|9461676|gb|BE453849.1|BE453849
genomic: AGCTCTGCAAAATTTGGTTTGATATGGGCGAATATGGTCGCATGAGCAAGgttcttggat ... ttactggcagATATTGAAGGAGCTGCATAAATCTTGCCAAAGGGAAGATGGTTCTGATGAT
EST: AGCTCTGCAAAATTTGGTTTGATATGGGCGAATATGGTCGCATGAGCAAG ATATTGAAGGAGTTGCATAAATCTTGCCEST: gi|33094377|gb|CF054371.1|CF054371
genomic: AGCTCTGCAAAATTTGGTTTGATATGGGCGAATATGGTCGCATGAGCAAGgttcttggat ... ttactggcagATATTGAAGGAGCTGCATAAATCTTGCC
EST: AGCTCTGCAAAATTTGGTTTGATATGGGCGAATATGGTCGCATGAGCAAG ATATTGAAGGAGCTGCATAAATCTTGCCAAAGGGAAGATGGTTCTGATGAT
genomic: AGCTCTGCAAAATTTGGTTTGATATGGGCGAATATGGTCGCATGAGCAAGgttcttggat ... ttactggcagATATTGAAGGAGCTGCATAAATCTTGCCAAAGGGAAGATGGTTCTGATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATTATGGTTCAAGACAAACTTGAAGCTCTGCAAAATTTGGTTTGATATGGGCGAATATGGTCGCATGAGCAAGgttcttggatcacttatttagttatagtcttcgatgcagtaagtttgtctatattattaaattagattcttactggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG