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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTCCGGAATGGACCGACCAGTTCGCATCAGGCATCCAGgcaagagctggtgttttggttttatctgcacaattctcgttagtctttctaatcaatcaatacgatctgttgttgtgtgcag

Basic information

species Zea mays
transcript GRMZM2G132251_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 5
CTTCCTCCGGAATGGACCGACCAGTTCGCATCAGGCATCCAGgcaagagctggtgtt---ttgg---ttttatctgcacaatt---ctcgttagtctttctaatcaatcaatacgatctgttg------ttgtgtgcag
|||||||| |||||||| || |||||||| || |||||||||||| |  ||  ||||    | |   |||||  ||| |   |    | || | |  |  | || | | |     | || |||      |||  || ||
CTTCCTCCCGAATGGACTGATCAGTTCGCCTCTGGCATCCAGgcatgcacttctgttcacctagatcttttacatgctcgtcttagtttgtgattgatatttattagtgatgctaaacttttgcttaatttgcttgtag

upper sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 5
CTTCCTCCGGAATGGACCGACCAGTTCGCATCAGGCATCCAGgcaagagctggtgttttggttttatctgcacaattctcgttagtctttctaatcaat---caatacgatctgttgttgtgtgcag
|||||||| |||||||||||||| |||| ||||||||| |||| ||            |  ||||   |  | | |  || | |   |  || | || |     ||  || | |             
CTTCCTCCAGAATGGACCGACCAATTCGAATCAGGCATTCAGgtaaatataatcaaacttcttttggttatatactgttcttgatcttaccttaacagtgttttatttgaccag-------------