1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAGgtaacttgcttctggtatctcagtaatctacctctccctctctctgcttatccaatttttttcttggtggaacactgcagaactattgatatcagtttggtggcataaacatgaaccgcctgattgatttctaaatgtatacacag
species | Zea mays |
transcript | GRMZM2G132060_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAG GCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAGEST: gi|148944299|gb|EC889396.2|EC889396
genomic: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAGgtaacttgct ... gtatacacagGCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAG
EST: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAG GCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAGEST: gi|148931686|gb|EC874876.2|EC874876
genomic: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAGgtaacttgct ... gtatacacagGCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAG
EST: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAG GCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAGEST: gi|211159306|gb|FL243892.1|FL243892
genomic: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAGgtaacttgct ... gtatacacagGCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAG
EST: AGCTTCCTGACTTNCAT-GCTGNCA-CTGGAATAGAAAAGGATA-GACAG -CTTATATTGAGGAAGAGGATEST: gi|22521467|gb|BU080278.1|BU080278
genomic: AGCTTCCTGACTT-CATTGCTG-CAACTGGAATAGAAAAG-ATAAGACAGgtaacttgct ... gtatacacagGCTTATATTGAGAAAGAGGAT
EST: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAG GCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAGEST: gi|21843267|gb|BQ703848.1|BQ703848
genomic: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAGgtaacttgct ... gtatacacagGCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAG
EST: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAG GCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAGEST: gi|148931684|gb|EC874873.2|EC874873
genomic: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAGgtaacttgct ... gtatacacagGCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAG
EST: CCAGCTTCCTGACTTCATTGCTGNCA-CTGGAATAGAAAAGATAAGACAG GCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAGEST: gi|26557871|gb|CA830106.1|CA830106
genomic: CCAGCTTCCTGACTTCATTGCTG-CAACTGGAATAGAAAAGATAAGACAGgtaacttgct ... gtatacacagGCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAG
EST: CCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGGAAAAGATAAGACAG GCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAGEST: gi|148966452|gb|EE017460.2|EE017460
genomic: CCAGCTTCCTGACTTCATTGCTGCAACTGGAATAG-AAAAGATAAGACAGgtaacttgct ... gtatacacagGCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAG
EST: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAG GCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAGEST: gi|21843287|gb|BQ703868.1|BQ703868
genomic: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAGgtaacttgct ... gtatacacagGCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAG
EST: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAG GGTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAG
genomic: TCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAGgtaacttgct ... gtatacacagGCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAAGAGAGGTATTGAGAAACAGCCTTTCCAGCTTCCTGACTTCATTGCTGCAACTGGAATAGAAAAGATAAGACAGgtaacttgcttctggtatctcagtaatctacctctccctctctctgcttatccaatttttttcttggtggaacactgcagaactattgatatcagtttggtggcataaacatgaaccgcctgattgatttctaaatgtatacacag
- - - - - - - - - - - - - - - - - - - - - - - TGCTGC