Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCTTGAAGACAGCTTGGATGATTGGTTTGATGAACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctcgattcatctttgcatgctttaattgtttataatagttgcacagtttcatctctcttattcttgccacttacatgaatgtgaaaaagcagg...

Basic information

species Zea mays
transcript GRMZM2G131324_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131324_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g50620.2 (Oryza sativa), 5'ss of exon 4
GCACCTTGAAGACAGCTTGGATGATTGGTTTGATGAACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTGgta-tattctcgattcatctttgcatgctttaattgtttataatagttgcacagtttcatctctcttattcttgccacttacatgaatgtgaaaaagcagg--
||||||||||||||  |||||||||||||| ||||| || || |||   ||  | |||||||| |||||||||||||||||||| ||||   ||||  ||||||  |||  || ||||| |||   |    ||| |  ||     |  ||  |||||||  ||  ||||||    | | | | ||    
GCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGAGGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttctttattcatgcttgtgtgttttaaatgtagttgtaggttacgtagagct-tgactactattcttatca--tacatggccttaatagaccaacga

upper sequence: GRMZM2G131324_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g21914.1 (Oryza sativa), 5'ss of exon 4
GCACCTTGAAGACAGCTTGGATGATTGGTTTGATGAACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTGgta--tattctcgattcatctttgcatgctttaattgtttataatagttgcacagtttcatctctcttattcttgccacttacatgaatgtgaaaaagcagg-
||||||||||||||  |||||||||||||| ||||| || || ||    ||  | |||||||| |||||||||||||||||||| ||||  | |  |   |||||  |||  |||||||| |||   |    ||| |  ||     |  ||  ||||||| |||  ||||||    ||||||| |    
GCACCTTGAAGACAATTTGGATGATTGGTTGGATGAGCAACTGGATGGTTATTTGGATGATGACTATCTTGTGTTTGATTGCCCAGgtaactttctttatttcatgattgtgtgctttaaatgtagttggaggttacgtagagct-tgactactattcttacca--tacatggccttgaaaaaaccaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76293904|gb|DV033472.1|DV033472
EST:     ACAGCTAGAGACCTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTG                         GCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
genomic: ACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctc ... tgctttttagGCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
EST: gi|67031739|gb|CO460488.1|CO460488
EST:     ACAGCTAGAGAACTACTTAGATGATGATTATCTTGTGTTTGATTGCCCTG                         GCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
genomic: ACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctc ... tgctttttagGCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
EST: gi|32931459|gb|CF036271.1|CF036271
EST:     ACAGCTAGAGAACTACTTAGATGATGATTATCTTGTGTTTGATTGCCCTG                         GCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
genomic: ACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctc ... tgctttttagGCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
EST: gi|76016034|gb|DT943204.1|DT943204
EST:     CAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTG                         GCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
genomic: CAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctc ... tgctttttagGCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
EST: gi|71758032|gb|DR955969.1|DR955969
EST:     CAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGA-TGCCCCTG                         GCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAG
genomic: CAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTG-CCCTGgtatattctc ... tgctttttagGCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAG
EST: gi|76010883|gb|DT938053.1|DT938053
EST:     ACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTG                         GCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
genomic: ACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctc ... tgctttttagGCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
EST: gi|26456742|gb|CA828325.1|CA828325
EST:     ACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTG                         GCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
genomic: ACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctc ... tgctttttagGCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
EST: gi|78113480|gb|DV531871.1|DV531871
EST:     ACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTG                         GCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
genomic: ACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctc ... tgctttttagGCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
EST: gi|71758174|gb|DR956111.1|DR956111
EST:     AGATGATGATTATCTTGTGTTTGATTGCCCTG                         GCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
genomic: AGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctc ... tgctttttagGCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
EST: gi|211012560|gb|FL439511.1|FL439511
EST:     CAGCTAGAGAACTACTTAGATGATGA-TATCTTTGTGTTTGATTGCCCTG                         GCCAGATTG-ACTCTTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAG
genomic: CAGCTAGAGAACTACCTAGATGATGATTATC-TTGTGTTTGATTGCCCTGgtatattctc ... tgctttttagGCCAGATTGAACTC-TTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAG
EST: gi|32934477|gb|CF039289.1|CF039289
EST:     ACAGCTAGAGAACTACTTAGATGATGATTATCTTGTGTTTGATTGCCCTG                         GCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
genomic: ACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctc ... tgctttttagGCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
EST: gi|60343210|gb|DN210183.1|DN210183
EST:     ACAGCTAGGGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTG                         GCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC
genomic: ACAGCTAGAGAACTACCTAGATGATGATTATCTTGTGTTTGATTGCCCTGgtatattctc ... tgctttttagGCCAGATTGAACTCTTCACACATGTTCCAGTTCTGCGGAACTTTGTCGAGC