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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTACGAATATTTGCTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggactattatcagactattgtcacttgtcagcctggcttcagaatgttaagtagccattgcaatttcaatttattcaattcaacatggataacaattccatttatgttttttcgtttcag

Basic information

species Zea mays
transcript GRMZM2G130889_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130889_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 5'ss of exon 9
CTTCTACGAATATTTGCTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggactattatcagactattgtcacttgtcagcctggcttcagaatgttaagtagccattgcaatttcaatttattcaattcaacatggataacaattccatttatgttttttcgtttcag
||||||||| || ||||||||||| ||| |||||||||||||||||||||||||||| || |||||||||| | |||| | |      ||    ||| |||   |  |||||     ||   |  |    | |||| ||     ||  ||| | ||||  | | || |   | |||| |||||   |    
CTTCTACGAGTACTTGCTCAAGGTTTGGGTCCAGGGGAATAAAACTGAGCATGTAAAGCATTACAGgtttgagcctataagcctcacttttcaccttttcatattcccttcactgatttcttttactg--gaaattccatacagtttcatttagcatgt-tgataactgtttatatgatttttgactag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67028781|gb|CO457530.1|CO457530
EST:     CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG                         ACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
EST: gi|60349712|gb|DN216685.1|DN216685
EST:     CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG                         ACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
EST: gi|22543150|gb|BU093588.1|BU093588
EST:     CTCAAGGNCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG                         ACAAATGTGGGAGACATCCATGGA
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGA
EST: gi|32849483|gb|CD989164.1|CD989164
EST:     CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG                         ACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
EST: gi|22935539|gb|BU571814.1|BU571814
EST:     CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG                         ACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
EST: gi|60342116|gb|DN209089.1|DN209089
EST:     CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG                         ACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
EST: gi|32801870|gb|CD954106.1|CD954106
EST:     GATCCGGGGGAATAAAACTGAGCATGTAAAACACTACAG                         ACAAATGTGGGAGACATCAATGGAAGGTCTATTA
genomic: GATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTA
EST: gi|32801642|gb|CD953878.1|CD953878
EST:     GATCCCGGGGAATAAAACTGAGCATGTAAAACACTACAG                         ACAAATGTGGGAGACATCAATGGAAGGTCTATTA
genomic: GATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTA
EST: gi|32941898|gb|CF046717.1|CF046717
EST:     CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG                         ACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
genomic: CTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTAAGTTTAACCAAGAAAAC
EST: gi|32801477|gb|CD953713.1|CD953713
EST:     GATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAG                         ACAAATGTGGGAGACATCAATGGAAGGTCTATTA
genomic: GATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggact ... ttcgtttcagACAAATGTGGGAGACATCAATGGAAGGTCTATTA