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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACTACCTGTTTTCACATCCTTTTTACAACATTTGAAATTGTATATCCAGTGCTCGTGATTCTTAAgtaagtatatgtaataacctttaaatatatgattgattatgcacttccctctgcgtcaagatattgccatgttgtttatcaagaaagcaaatttgagaat...

Basic information

species Zea mays
transcript GRMZM2G130749_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130749_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 5'ss of exon 5
GCTACTACCTGTTTTCACATCCTTTTTACAACATTTGAAATTGTATATCCAGTGCTCGTGATTCTTAAgtaagtatatgtaataacctttaaatatatgattgattatgcacttccctctgcgtcaagatattgccatgttgtttatcaagaaagcaaatttgagaat----
| | |||||||  | || ||| |  || |||||   |||||||||||||||||||| |||||||||||||||| ||||||||   |||| || |||||||  |||  ||||  |  || ||   |||||  || |       |   | ||||||    || | |  ||    
GTTGCTACCTGCCTCCATATCTTCCTTTCAACAACCGAAATTGTATATCCAGTGCTTGTGATTCTTAAgtaaggatatgtaac--ccttcaagtatatgacggatcttgcaaattgctgtggaacaagagttttctcaaacat--gttaagaaaatgcatgtaaacatacat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149108049|gb|EE292403.2|EE292403
EST:     ATCCTTTTTACAACATTTGAAATTGTATATCCAGTGCTCGTGATTCTTAA                         GTGTGATTCTGCAGTTTTATCAGGCTTTGTGTTGATGTTTATTGCCTGCAT
genomic: ATCCTTTTTACAACATTTGAAATTGTATATCCAGTGCTCGTGATTCTTAAgtaagtatat ... ctgggttcagGTGTGATTCTGCAGTTTTATCAGGCTTTGTGTTGATGTTTATTGCCTGCAT