Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGCCAGGATTCAACTAGAATCTGAAGCGAGGGAAGTGAACCCTTTCTTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtagctgcatgatttgtgttctcctgccccattgatgtttcggagccttacatgttctgttttcttggggaaaaatgtgttcctttgcaaggtaacctttctaagtttttttgtgctttgataattgatactcaatgcag

Basic information

species Zea mays
transcript GRMZM2G130548_T03
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67010741|gb|CO439490.1|CO439490
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCNGTTTGGANGAAGATGTCTGGATATTANGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|47961743|gb|CN844452.1|CN844452
EST:     TCAATCCAGGATATCAGTACTAGGCAACCATTTTCCCCTTCACTTGCCAG                         NAATGTGCTAG
genomic: TCAATCCAGAATATCAGTACTAGGCAACCATTTTCCC-TTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAG
EST: gi|76292040|gb|DV031608.1|DV031608
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|101383449|gb|EB813780.1|EB813780
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|86472314|gb|DY238684.1|DY238684
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|91877108|gb|EB407065.1|EB407065
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCCCTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|5439382|gb|AI820303.1|AI820303
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|29945353|gb|CB815596.1|CB815596
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|60341409|gb|DN208382.1|DN208382
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|16926976|gb|BM080044.1|BM080044
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|45567900|gb|CK985803.1|CK985803
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|22489673|gb|BU049596.1|BU049596
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTACCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|18649960|gb|BM498779.1|BM498779
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTACCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|87153170|gb|DY397959.1|DY397959
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTACCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|211470172|gb|FL446046.1|FL446046
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|211320303|gb|FL454022.1|FL454022
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|50337772|gb|CO532898.1|CO532898
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|32865321|gb|CF005003.1|CF005003
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|211023896|gb|FL457615.1|FL457615
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|19822487|gb|BQ048511.1|BQ048511
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTACCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT