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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCACAGAGGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctgtttcctgttaaattttaccattctcttttgtgaaaatagtggacacttgcaccagttaggtttttttttgtgctgtgagaagcacagaaa...

Basic information

species Zea mays
transcript GRMZM2G130548_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130548_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g51290.1 (Oryza sativa), 5'ss of exon 4
-----------------------------------------CTGCACAGAGGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctgttt-----cctgttaaattttaccattctcttttg--tgaaaatagtggacactt--gcaccagttagg---tttttttttgtgctgtgaga--agcacagaaa------------------------------------------------
                                         |||| ||||| |||||||| ||||||||||||| ||||||||| | ||| ||||||||||||||||||  ||      |  || ||  |||  |||||  | ||     || ||||   |  ||   | || | |||     ||| ||||  | ||| | |  ||     ||                                                 
AAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACATTGAACAAAATGGATCAAGAGCGTTTGAAAGTCTGGTTAACAAGgtattatctacttatggatccatttaaagttagaattcttctgtgaacagaagtagtcccctttttgtctcctgctagcgacctttctttttgggtgtcatatcagagtgcaacctacttatgtgttttaatctttggcacataacatttcaattcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|111145857|gb|EE258097.1|EE258097
EST:     GGTACATTGAGCAAAATGGATCACAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|30052458|gb|AI065747.2|AI065747
EST:     ATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: ATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|32831864|gb|CD971542.1|CD971542
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTATGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|29945353|gb|CB815596.1|CB815596
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|211270731|gb|FL474956.1|FL474956
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA