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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCAAACCATATGATGATGGAGgtatgctttttaacaattagtttctcatgccgtatatcatacttttggaaatcagcatgtagcatgctaatggctatgcttatctgagtag

Basic information

species Zea mays
transcript GRMZM2G130440_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130440_T01 (Zea mays), 5'ss of exon 5
lower sequence: EFJ31432 (Selaginella moellendorffii), 5'ss of exon 5
GACCAAACCATATGATGATGGAGgtatgctttttaacaattagtttctcatgccgt-atatca-tacttttggaaatcagcatgtagcatgctaatggctatgcttatctgagtag
||||||||||||||||||||||||| || || |     ||  |    |   ||||  || ||| |  ||||     ||    |  ||                             
GACCAAACCATATGATGATGGAGgtttgtttatcg-tgatctgcacttttggccgcgatttcagtgatttt-----tctttgtccag-----------------------------

upper sequence: GRMZM2G130440_T01 (Zea mays), 5'ss of exon 5
lower sequence: EFJ38712 (Selaginella moellendorffii), 5'ss of exon 5
GACCAAACCATATGATGATGGAGgtatgctttttaacaattagtttctcatgccgt-atatca-tacttttggaaatcagcatgtagcatgctaatggctatgcttatctgagtag
||||||||||||||||||||||||| || || |     ||  |    |   ||||  || ||| |  ||||     ||    |  ||                             
GACCAAACCATATGATGATGGAGgtttgattatcg-tgatctgcacttttggccgcgatttcagtgatttt-----tctttgtccag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211383314|gb|FK985177.1|FK985177
EST:     CGACCAAACCATATGATNGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCC
genomic: CGACCAAACCATATGAT-GATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCC
EST: gi|211391225|gb|FK985220.1|FK985220
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|149097409|gb|EE183263.2|EE183263
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211393849|gb|FK985231.1|FK985231
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAA
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAA
EST: gi|149000688|gb|EE037899.2|EE037899
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211522447|gb|FK985268.1|FK985268
EST:     ACGACCAAACCATATGATGATGGAA                         GTGTGGAATCC
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCC
EST: gi|211396467|gb|FK985242.1|FK985242
EST:     RCGACCAAGCCATATGATGATGGAG                         GTGTGGAATCCC
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCC
EST: gi|149070632|gb|EE159042.2|EE159042
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211267398|gb|FK985117.1|FK985117
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|149106392|gb|EE292114.2|EE292114
EST:     ACGACCAGCCCATATGATGATGGAG                         GGGTGGA-TCCCCTTGGAG
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAG
EST: gi|211393851|gb|FK985233.1|FK985233
EST:     CGACCAAACCATATGATNGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCC
genomic: CGACCAAACCATATGAT-GATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCC
EST: gi|211519447|gb|FK985265.1|FK985265
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|149072859|gb|EE161112.2|EE161112
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|149008575|gb|EE040753.2|EE040753
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|78081606|gb|DV510018.1|DV510018
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211267399|gb|FK985118.1|FK985118
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTACTTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|67033024|gb|CO461773.1|CO461773
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|149108383|gb|EE292721.2|EE292721
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211385951|gb|FK985193.1|FK985193
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211267391|gb|FK985110.1|FK985110
EST:     CGACCAAACCATATGATGGATGGAG                         GTGTGGGATCCCCTTGGNNAGTTGTGGGTGTTATAACGGCATTTTATTTC
genomic: CGACCAAACCATATGATG-ATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGG--AGTTGTGGGTGTTATAACGGCATTTAATTTC
EST: gi|211385938|gb|FK985180.1|FK985180
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGANGT-GTGGGTGGTATAACGGCATTTAATTTCCC
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGA-GTTGTGGGTGTTATAACGGCATTTAATTTCCC
EST: gi|149076636|gb|EE165275.2|EE165275
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|13126736|gb|BG317306.1|BG317306
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211262521|gb|FK985084.1|FK985084
EST:     CGACCAAACCATNATGATGATGGAG                         GTGTGGAATCCCCTTGGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCC
genomic: CGACCAAACCAT-ATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGG-AGTTGTGGGTGTTATAACGGCATTTAATTTCCC
EST: gi|211391219|gb|FK985214.1|FK985214
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGT-ATAACGGGATTTAATTT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTT
EST: gi|211269835|gb|FK985128.1|FK985128
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATA-CGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|149110789|gb|EE190608.2|EE190608
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|148963296|gb|EE014287.2|EE014287
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211264959|gb|FK985097.1|FK985097
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCC
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCC
EST: gi|211388576|gb|FK985197.1|FK985197
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGANGT-GTGGGTGTTATAACGGCATTTAATTTCCC
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGA-GTTGTGGGTGTTATAACGGCATTTAATTTCCC
EST: gi|211396465|gb|FK985240.1|FK985240
EST:     ACGACCAAAC-ATATGATGATGGAG                         GGGTGGA-TCCCCTTGGGAGTGGTGG-TGTTATAACGGCATTTAATTTCCC
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGG-AGTTGTGGGTGTTATAACGGCATTTAATTTCCC
EST: gi|211380665|gb|FK985150.1|FK985150
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTG
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTG
EST: gi|211396477|gb|FK985252.1|FK985252
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211380677|gb|FK985162.1|FK985162
EST:     ACGACCAAAC-ATATGATGATGGAG                         GTGTGGA-TCCCCTTGGAGNNTGTGG-TGTTATA-CGGCATTTAATTTCCC
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGT-TGTGGGTGTTATAACGGCATTTAATTTCCC
EST: gi|211391213|gb|FK985208.1|FK985208
EST:     CGACCAAACCANTATGATGATGGAG                         GTGTGGA-TCCCCTTGGNAGTTGTGGGTGTTATAACGGCATTTAATTTCCC
genomic: CGACCAAACCA-TATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGG-AGTTGTGGGTGTTATAACGGCATTTAATTTCCC
EST: gi|211388582|gb|FK985203.1|FK985203
EST:     CGACCAAACCATATNGATGATGGAG                         GTGTGGA-TCCCCTTGGAGTTGTGG
genomic: CGACCAAACCATAT-GATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGG
EST: gi|149073717|gb|EE162025.2|EE162025
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|71767769|gb|DR965706.1|DR965706
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|67042959|gb|CO469214.1|CO469214
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|149021323|gb|EE045783.2|EE045783
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211519449|gb|FK985267.1|FK985267
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCC
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCC
EST: gi|211267387|gb|FK985106.1|FK985106
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGG
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGG
EST: gi|211519446|gb|FK985264.1|FK985264
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|60398824|gb|DN231640.1|DN231640
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211380674|gb|FK985159.1|FK985159
EST:     CGACCAAACCATNATGATGATGGAG                         GTGTGGAATCCCCTTGGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCC
genomic: CGACCAAACCAT-ATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGG-AGTTGTGGGTGTTATAACGGCATTTAATTTCCC
EST: gi|211262519|gb|FK985082.1|FK985082
EST:     ACGACCAA-CCATATGATGATGGAG                         GTGTGGAATCCCCCTTGGAGTTGTGGGTGCTATAA
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCC-TTGGAGTTGTGGGTGTTATAA
EST: gi|148982784|gb|EE028613.2|EE028613
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211269838|gb|FK985131.1|FK985131
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211396468|gb|FK985243.1|FK985243
EST:     ACGANCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGT
EST: gi|211378025|gb|FK985147.1|FK985147
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|13126340|gb|BG316910.1|BG316910
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211262517|gb|FK985080.1|FK985080
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCC
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCC
EST: gi|211393850|gb|FK985232.1|FK985232
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTA
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTA
EST: gi|148935117|gb|EC879157.2|EC879157
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211267394|gb|FK985113.1|FK985113
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAG
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAG
EST: gi|211388581|gb|FK985202.1|FK985202
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTAT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTAT
EST: gi|149059483|gb|EE156967.2|EE156967
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211393854|gb|FK985236.1|FK985236
EST:     CGACCAAACCATATGATTATGGGAG                         GTGTGGA-TCCCCTTG
genomic: CGACCAAACCATATGATGATGG-AGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTG
EST: gi|211391227|gb|FK985222.1|FK985222
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211383309|gb|FK985172.1|FK985172
EST:     CGACCAAACCATATGATNGATGGAG                         GTGTGGAATCCCCTTGNNAGT-GTGGGTGTTATAACGGCATTTAATTTCC
genomic: CGACCAAACCATATGAT-GATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGG-AGTTGTGGGTGTTATAACGGCATTTAATTTCC
EST: gi|211262524|gb|FK985087.1|FK985087
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCC-TTGGAG
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAG
EST: gi|211388574|gb|FK985195.1|FK985195
EST:     CGACCAAACCATATGATNGATGGAG                         GTGTGGAATCCCCTTGGNAGTTGTGGGTGTTATAACGGCATTTAATTTCC
genomic: CGACCAAACCATATGAT-GATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGG-AGTTGTGGGTGTTATAACGGCATTTAATTTCC
EST: gi|211393847|gb|FK985229.1|FK985229
EST:     ACGACCAAAC-ATATGATGATGGAG                         GTGTGGA-TCCCCTTGGAG
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAG
EST: gi|211380669|gb|FK985154.1|FK985154
EST:     CGACCAAACCATATNGATGATGGAG                         GTGTGGAATCCCCTTGGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCC
genomic: CGACCAAACCATAT-GATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGG-AGTTGTGGGTGTTATAACGGCATTTAATTTCCC
EST: gi|148962667|gb|EE013566.2|EE013566
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|60358490|gb|DN225463.1|DN225463
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|149082793|gb|EE172015.2|EE172015
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211267389|gb|FK985108.1|FK985108
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211380667|gb|FK985152.1|FK985152
EST:     ACGACCAAACCATATGATGATGGAC                         GTGTGGAATCCCCTTGGAGCTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211269832|gb|FK985125.1|FK985125
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|211383306|gb|FK985169.1|FK985169
EST:     ACGACCAAACCATATGATTATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTA
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTA
EST: gi|211519438|gb|FK985256.1|FK985256
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
EST: gi|148935242|gb|EC879279.2|EC879279
EST:     ACGACCAAACCATATGATGATGGAG                         GTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT
genomic: ACGACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 385

GACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCTTGTGCTGTGCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 587

GACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCTTGTGCTGTGCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 532

GACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCTTGTGCTGTGCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 363

GACCAAACCATATGATGATGGAGgtatgctttt ... atctgagtagGTGTGGAATCCCCTTGGAGTTGTGGGTGTTATAACGGCATTTAATTTCCCTTGTGCTGTGCTTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCAAACCATATGATGATGGAGgtatgctttttaacaattagtttctcatgccgtatatcatacttttggaaatcagcatgtagcatgctaatggctatgcttatctgagtag

- - - - - - - - GATGGA