1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcgctgacatactttgtgtgttcagactctagaggaagtgcttgattccaggactttttccttgtttattgtaaaaggaacaggagagcagaaatgaatggcttactcattttatctgttgcctttcctatactaattagtttggccttttattgtgtgaaagcttag
species | Zea mays |
transcript | GRMZM2G128995_T05 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|71427970|gb|DR809020.1|DR809020
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|211413494|gb|FL407160.1|FL407160
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGTAGCAAAGTGGGAG CTTAGCGGGTTCGTGATCTTTCCCATCTGGTAAAACCCGGAGGATATGATCEST: gi|211452191|gb|FL398498.1|FL398498
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G--TTCGTGATCTTTCCAATCTGGTAAAACC-GGAGGATATGATC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|149010225|gb|EE042044.2|EE042044
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|19351525|gb|BM896057.1|BM896057
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: AATAATGCAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|31348626|gb|CD432983.1|CD432983
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|149000734|gb|EE037952.2|EE037952
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|148954149|gb|EC899548.2|EC899548
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACCTCGGEST: gi|67013699|gb|CO442448.1|CO442448
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACCTCGG
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGCTTAGEST: gi|22491457|gb|BU051380.1|BU051380
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGT-GG-G---AGgtaaattgcg ... gaaagc
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|211319940|gb|FL427662.1|FL427662
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: ATAATGTAAGGAGCCNAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGGTTCGTGATCTTTCCCATCTGGTAAAACCGGGAGGATATGATCEST: gi|87153287|gb|DY398076.1|DY398076
genomic: ATAATGTAAGGAGCC-AGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G--TTCGTGATCTTTCCAATCTGGTAAAACCGG-AGGATATGATC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|6095541|gb|AW120208.1|AW120208
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|148968978|gb|EE019672.2|EE019672
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|148963815|gb|EE014912.2|EE014912
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|149098811|gb|EE184822.2|EE184822
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCACEST: gi|211532950|gb|FL381081.1|FL381081
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G-G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCAC
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGCCCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGGAGGATATGATEST: gi|60358961|gb|DN225934.1|DN225934
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G---G-TTCGTGATCTTTCCAATCTGGTAAAACCGG-AGGATATGAT
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGCTTAGEST: gi|211057980|gb|FL426570.1|FL426570
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGT-GG-G---AGgtaaattgcg ... gaaagc
EST: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAG CTTAGNCGGTTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCA
genomic: AATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcg ... gaaagcttagC---G--G-TTCGTGATCTTTCCAATCTGGTAAAACCGGAGGATATGATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGGAAGCAAAGTGGGAGgtaaattgcgctgacatactttgtgtgttcagactctagaggaagtgcttgattccaggactttttccttgtttattgtaaaaggaacaggagagcagaaatgaatggcttactcattttatctgttgcctttcctatactaattagtttggccttttattgtgtgaaagcttag
- - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG