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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCTCTATGAAGACAATGAATATGCTCTCTACACTGTAACACTGTTTGCTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttccttgagagtcgtatgtttacactttatattaatctggctatccttctttagccttttgttatccactataagctttaatttcattttattccag

Basic information

species Zea mays
transcript GRMZM2G128995_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 7
AAAGCTCTATGAAGACAATGAATATGCTCTCTACACTGTAACACTGTTTGCTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtt--------------tccttgagagtcgtatgtttacactttatattaatctggctatccttctttagccttttgttatccactataagctttaatttcattttattccag------------------------------------------------------------------
||| || ||||| |||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| || || || ||||| |||||||  ||              | | | | |  | | ||||||||||| | |||    | ||| |  | | |    | || |   | |   ||||  |   |    | || | ||  |                                                                  
AAAACTTTATGAGGACAATGAGTATGCTCTCTACACGGTAACATTGTTTGCTAAGGTTGTTGACAACTTTAAGGTCCGTGCACGTGAAAAAGGTTTCCAGgtaaatttgccgtcctaactttttcatcaaaaacctttgtttacacttcacatt----tagcttttatccctagagccttaggagttccaaataacttgggacagaaattcagtcttgtttttctgtccccatcaatctggcaattctctgtcacccattaacttgtattacgttgaaatacag

upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 7
AAAGCTCTATGAAGACAATGAATATGCTCTCTACACTGTAACACTGTTTGCTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttccttgagagtcgtatgtttacactttatattaatctggctatccttctttagccttttgttatccactataagctttaatt-tcattttattccag
 |||||  ||||||||||||| |||||||| ||||||||||| ||||||      |||| |||||||||||       ||| || || |  || ||||| || || ||    |     |   |   | |    ||||  ||        |   | | | |   || |  |||     ||    |||  |  |     || | || 
GAAGCTGCATGAAGACAATGAGTATGCTCTATACACTGTAACCCTGTTTCACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAAgtgagtttgttctt----taacacactcaaggattatgctacagaaataactttacctcaaatttatactattt-tgattttttttgttagtggacatagtgcaa

upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv17s0000g00460.t01 (Vitis vinifera), 5'ss of exon 7
AAAGCTCTATGAAGACAATGAATATGCTCTCTACACTGTAACACTGTTTGCTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttccttgagagtcgtatgtttacactttatattaatctggctatccttctttagccttttgttatccactataagctttaatttcattttattccag
 ||| |  | || |||||||||||||||||||| ||||||||  | |||| |   |||| |||||||||||||    | || || ||||  |||||||| || || ||  | |   | | |  |   |       ||  | ||| |    |  || | |   ||  || |||  | | ||||  ||  ||||  ||  ||    
GAAGTTGCACGAGGACAATGAATATGCTCTCTATACTGTAACTATATTTGGTCGTGTTGCTGACAATTTTAAGACTAGCGCACGAGAGAGAGGTTTTCAAgtgagtttctcattcaaatagcttagatttggccaattgttatcagcaagtagttttat---ctcatgctatgtaatttaagaattcctttccattctttggt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67019107|gb|CO447856.1|CO447856
EST:     GACAATTTTTAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: GACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|148963814|gb|EE014911.2|EE014911
EST:     CAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|32907249|gb|CF012062.1|CF012062
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|40334835|gb|CK368905.1|CK368905
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|60338283|gb|DN205256.1|DN205256
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|37401333|gb|CF638029.1|CF638029
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|32910284|gb|CF015096.1|CF015096
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|60354564|gb|DN221537.1|DN221537
EST:     CAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|12972189|gb|BG267858.1|BG267858
EST:     TGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: TGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|60358961|gb|DN225934.1|DN225934
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|149000733|gb|EE037951.2|EE037951
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|149098810|gb|EE184821.2|EE184821
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|148968977|gb|EE019671.2|EE019671
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|40303110|gb|CK347497.1|CK347497
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|149000703|gb|EE037917.2|EE037917
EST:     GTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: GTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|67017448|gb|CO446197.1|CO446197
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|78076481|gb|DV504915.1|DV504915
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|211201056|gb|FL359983.1|FL359983
EST:     AATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: AATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|67013699|gb|CO442448.1|CO442448
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|37378328|gb|CF625849.1|CF625849
EST:     GAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: GAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
EST: gi|71427969|gb|DR809019.1|DR809019
EST:     CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAG                         GTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG
genomic: CTAAGGTTGTTGACAATTTTAAGGTCCGTGCTCGCGAGAAGGGTTTTCAGgtaaggtttc ... tttattccagGTCCGTGATTTTGAGTACAGTCCTGAAGCACAGGAAAGTCGGAAGCAGGAG