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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGTGGCAGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGgttgcattataaggtttacctttattacagtatttgtttatcttctcatattagtttgttccttgcagatgtttggctgaaaaagccaatggatgcaccttcattatgatccctatagaaaaataactacagctaggttgtctaattttattttctttgtttgtattcag

Basic information

species Zea mays
transcript GRMZM2G128914_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128914_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 5'ss of exon 5
CTGGGTGGCAGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGgttgcattataaggtttacctttattacagtatttgtttatcttctcatattagtttgttccttgcagatgtttggctgaaaaagccaatggatgcaccttcattatgatccctatagaaaaataactacagctaggttgtctaattttattttctttgtttgtattcag
||||||||| || ||| ||  ||||||||||||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||  || ||  ||||||| ||| ||||   ||||| |  | |   |    |||| |  |  |  | | |          || ||  |||  |     ||| ||  ||| |||  | |   || ||||| ||| | || | | ||| |||||||
CTGGGTGGCCGATTCACTAAGCTTTGACAAGGATTACGATGCAAGTGTCTTTGAAACGACCATAAGgttgccttataaggtttactattgttgtagtattttttt-tcttaaaatatttgact-tctttgatcgatgctatgtaggcagacc----------acattttttagaac----ataaaagtatatcta--gtt---ttttctaagtttctgttttatttttatattcag

upper sequence: GRMZM2G128914_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 5
CTGGGTGGCAGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGgttgcattataaggtttacctttattacagtatttgtttatcttctcatattagtttgttccttgcagatgtttggctgaaaaagccaatggatgcaccttcattatgatccctatagaaaaataactacagctaggttgtctaattttattttctttgtttgtattcag
 ||||| ||| | || || || ||| ||||||||||||| || ||||||||||| || ||||||||||| | ||||||||||||| |||      | | ||  ||  |   | | |  ||||   |  |||      | ||   ||     | | ||  ||    || |  || || | | | |       | | |  | |     || |                          
ATGGGTTGCAAACTCTTTGGATTTTAACAAGGATTATGAAGCAAGTGTTTTTGAGACAACCATAAGgttactttataaggtttac-tttgcagttgaagttccttccccatttacaaaagttatatttttgagctcatgtgttaga-----ctactgattgttttttta--atcattctttttgttggtcgatttccaccaaa--atccag-------------------------

upper sequence: GRMZM2G128914_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 4
CTGGGTGGCAGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGgttgcattataaggtttacctttattacagtatttgtttatcttctcatattagtttgttccttgcagatgtttggctgaaaaagccaatggatgcaccttcattatgatccctatagaaaaataactacagctaggttgtctaattttattttctttgtttgtattcag
 ||||| ||| | || || || ||| ||||||||||||| || ||||||||||| || ||||||||||| | |||||| |||||| |||      | | |   ||  |   | | |  | | | ||  |          ||  | | | | |  ||         || ||  |  ||  | | |    ||  | ||    |    |                              
ATGGGTTGCAAACTCTTTGGATTTTAACAAGGATTATGAAGCAAGTGTTTTTGAGACAACCATAAGgttactttataaagtttac-tttgcagttgaagtcccttccccatttacaaaattatattttt---gagctcatgtgttagacaactgatattgtttttttaatctttttctttgttggtcgatttccaccaaaatccag------------------------------

upper sequence: GRMZM2G128914_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT3G21160.1 (Arabidopsis thaliana), 5'ss of exon 5
CTGGGTGGCAGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGgttgcattata-aggtttacctttattacagtatttgtttatcttctcatattagtttgttccttgcagatgtttggctgaaaaagccaatggatgcaccttcattatgatccctatagaaaaataactacagctaggttgtctaattttattttctttgtttgtattcag
 ||||| |||   |||||||| || ||||||||||||| ||| ||| | ||||| || ||||||||||||||||  | ||||||||| |  ||    | ||| |  || | || | |  |||    |  ||   | | | ||        ||  ||   |            ||      ||| |||   |  |  | |      ||  ||  | | || |||||||| |  |||||
GTGGGTAGCAAGCTCATTAGATTTCGACAAGGATTATGCTGCCAGTATGTTTGAGACAACCATAAGgttgcatttaacaggtttaccatgttt----tttttctacatgtactaagaagagtcatcttgtttaggttatctgttgtgtgtagttaacaaa------------atatgtggtatggaagtgtggcatctg------tgcttatatattttctctttgttggctttcag

upper sequence: GRMZM2G128914_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 5
CTGGGTGGCAGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGgttgcattataaggtttaccttt---attacagtatttgtttatcttctcatatt--agtttgttccttgcagatgtttggctgaaaaagccaatggatgcaccttc-attatgatccc-tatagaaaaataactacagctaggttgtct---aattttattttctttgtttgtattcag-------
 ||||| ||| | ||||| || ||  ||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||   |    |||     ||||||   |  |||  |     ||     |  | |   ||| |   ||   ||   | |  |||| || |   |||   |||    ||     | | |  |    | | || | |   ||||||||||| |||  || | ||          
GTGGGTTGCAAACTCATTGGATTTCAACAAGAATTATGAGGCTAGTGTTTTTGAGACGACCATAAGgttgcattataaggtttaatatgtagattgtttaatttgtcctttctcttgttcggaagaccagttatgggttatgatgaccttgcaatctctaaagatgaacttgggattgaaatcttgcatttttgacttatcatttttggatttttttttaattttattttattttattctttttgaaatccag

upper sequence: GRMZM2G128914_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv11s0052g00140.t01 (Vitis vinifera), 5'ss of exon 5
CTGGGTGGCAGAGTCATTAGACTTTGACAAGGATTATGATGCGAGTGTTTTTGAAACGACCATAAGgttgcattataaggtttacctttattacagtatttgtttatcttctcatattagtttgttccttgcagatgtttggctgaaaaagccaatggatgcaccttcattatgatccctatagaaaaataactacagctaggttgtctaattttattttctttgtttgtattcag
 ||||| ||| | || || || ||  ||||| | ||||| || ||||||||||| || |||||||||||||||||||||||||    |||||        | ||||| |  | |||  ||||| ||  ||     |    | | ||      |  |||          |  | ||  | |||    | ||  | || |||   |   ||  |||| | | |||   ||| || |||
GTGGGTTGCAAACTCGTTGGATTTCAACAAGAACTATGAGGCTAGTGTTTTTGAGACAACCATAAGgttgcattataaggtttcatcttatt--------tatttatttaataata--agtttctttttttttctttggggacagaggtcctctctgggatggttgagaggaagaagcgtatg---acatgtccactgctttttatcct--ttttgtatacttatgttgaatgcag