1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGTTCACAATGTTCATAGCCATCACGTTTCCCTTCTTCGACGGGCTGCTCAGCTTCTTCGGCGGATTCGCGTTCGCGCCCACAACCTATTTCgtaagctcctgctgcacctgcactgtcgttttaggccggggtttcagaattgcaacaagactactacatgagagctagctgaccaaatcttcttgcttttcttcttcttctgctgccag
species | Zea mays |
transcript | GRMZM2G127328_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGGATTCGCGTTCGCGCCAACAACNTATTTC TTTCCATGCATCATGTGGCTCGCAATCTACAAGCCCAAACGGTTCAGCCTCEST: gi|24934362|gb|CA452580.1|CA452580
genomic: CGGATTCGCGTTCGCGCCCACAACCTATTTCgtaagctcct ... ctgctgccagCTTCCATGCATCATGTGGCTCGCAATCTACAAGCCCAAACGGTTCAGCCTC
EST: GGCTGCTCAGCTTCTTCGGCGGATTCGCGTTCGCGCCCACAACCTATTTC CTTCCGTGCATCATGTGGCTCGCAATCTACAAGCCCAAACGGTTCAGCCTCEST: gi|32840328|gb|CD980009.1|CD980009
genomic: GGCTGCTCAGCTTCTTCGGCGGATTCGCGTTCGCGCCCACAACCTATTTCgtaagctcct ... ctgctgccagCTTCCATGCATCATGTGGCTCGCAATCTACAAGCCCAAACGGTTCAGCCTC
EST: GGCTGCTCAGCTTCTTCGGCGGATTCGCGTTCGCACCCACAACCTATTTC CTTCCCTGCATCATGTGGCTCGCAATCTACAAGCCCAAACGGTTCAGGCCT
genomic: GGCTGCTCAGCTTCTTCGGCGGATTCGCGTTCGCGCCCACAACCTATTTCgtaagctcct ... ctgctgccagCTTCCATGCATCATGTGGCTCGCAATCTACAAGCCCAAACGGTTCA-GCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTTCACAATGTTCATAGCCATCACGTTTCCCTTCTTCGACGGGCTGCTCAGCTTCTTCGGCGGATTCGCGTTCGCGCCCACAACCTATTTCgtaagctcctgctgcacctgcactgtcgttttaggccggggtttcagaattgcaacaagactactacatgagagctagctgaccaaatcttcttgcttttcttcttcttctgctgccag
- - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - TCAGCT