Sequence
atgc intronic sequence ATGC exonic sequenceGAAGAGTAACATCAGAAAGTGTCATATTCAGCTTTGGCACTATACTGCTGGACCTCCTAAGTGGAAAACGTATACCTCCATCCCGTgtaagtttttcttgctggtaactattttcttcccttgttgcactttatcctagttcccgtgtgatacagaagtacagaacttttttcacaaaagaccttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g04050.1 (Oryza sativa), 5'ss of exon 5
GAAGAGTAACATCAGAAAGTGTCATATTCAGCTTTGGCACTATACTGCTGGACCTCCTAAGTGGAAAACGTATACCTCCATCCCGTgtaagtttttcttgctggtaactattttcttcccttgttgcactttatcctagttcccgtgtgatacagaagtacagaacttttttcacaaaagaccttt
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GTAGAGTTACTCCAGAAAGTGTCATATTCAGCTTTGGTACTGTTCTCCTCGACCTTCTAAGTGGAAAGCGCATACCTCCTTCCCATgtaagtttattttgctagtaaagtatgccttttcttgttcctctttatcctagctccaatgcagcataagaagtccgaaatccgtactgaaaataccttg
upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv18s0001g00180.t01 (Vitis vinifera), 5'ss of exon 5
GAAGAGTAACATCAGAAAGTGTCATATTCAGCTTTGGCACTATACTGCTGGACCTCCTAAGTGGAAAACGTATACCTCCATCCCGTgtaagtttttcttgctggtaactattttcttcccttgt-tgcactt-tatcctagtt-----cccgtgtgatacagaagtacagaacttttttcacaaaagaccttt
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GAAGGGTTACTCCTGAAAGTGTTATCTTCAGCTTTGGGACTGTACTTCTGGATCTCCTTAGTGGAAAGCATATTCCTCCAAGTCATgtaagtgttttgtgatgttatacattgtgcgtgcgtgtgtgtgtgtgtgtgtgtgttgtgaatctctgctttttatggttacatgctattgttctccaat-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71310550|gb|DR791570.1|DR791570EST: CGTATACCTCCATCCCGT GCTCTTGATATGATAAAAGGCAACAATATCCAAGTGCTGATGGATTCACAT
genomic: CGTATACCTCCATCCCGTgtaagttttt ... tttcgctcagGCTCTTGATATGATAAAAGGCAACAATATCCAAGTACTGATGGATTCACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGAGTAACATCAGAAAGTGTCATATTCAGCTTTGGCACTATACTGCTGGACCTCCTAAGTGGAAAACGTATACCTCCATCCCGTgtaagtttttcttgctggtaactattttcttcccttgttgcactttatcctagttcccgtgtgatacagaagtacagaacttttttcacaaaagaccttt
- - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA