Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGACTTGATGTGGATACCCTCTATGTGTCGCACATTCAAGTTAATCAGGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctatctaactaaagttgaagttttgctatgcgatgaactgttcttcatttggagcttaacattctgtttgcctacctggtccag

Basic information

species Zea mays
transcript GRMZM2G126594_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126594_T02 (Zea mays), 5'ss of exon 5
lower sequence: PP1S364_56V6.2 (Physcomitrella patens), 5'ss of exon 3
AAAGGACTTGATGTGGATACCCTCTATGTGTCGCACATTCAAGTTAATCAGGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctatctaactaaagttgaagttttgctatgcgatgaactgttct--tcatttggagcttaac-------attctgtttgcctacctggtccag--
||||| |||||||| || || ||   ||| || |||||||||||||| ||||| ||||| |||||  |  | || ||||||||||||||||| ||||||||||||| ||||  |      |    | || ||| |  |||   |||| ||  |  |   ||||  ||        ||   |    | |||||  | ||   
AAAGGTCTTGATGTAGACACTCTTGTTGTATCCCACATTCAAGTTAACCAGGCACAGAAACAGCGTAGACGAACCTACCGTGCTCATGGACGTATCAACCgtaagt-tatcccatcgttttacttggttagctttatgatcttctgtcctattagtgctgagcggaagggcgatgatgacgaaatcttacctatttcatga

upper sequence: GRMZM2G126594_T02 (Zea mays), 5'ss of exon 5
lower sequence: PP1S97_78V6.3 (Physcomitrella patens), 5'ss of exon 3
AAAGGACTTGATGTGGATACCCTCTATGTGTCGCACATTCAAGTTAATCAGGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctatctaactaaagttgaagttttgctatgcgatgaactgttcttcatttggagctt--aaca-ttctgtttgcctacctg-gtccag------
|| || || |||||||| || ||   ||| || ||||||||||| || ||||| |||||||||||| |  | || |||||||| || || || |||||||||||||     |      | ||    ||||  |   |       | |  |||  ||  |  ||  | || |||||  || |  |  | || | |      
AAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAACCAGGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggcgttgtcggacttttgttttttttcctctgacttttctgtttcggttatattttcgatcagttctgggtgacggcaggagtgccgagtctc

upper sequence: GRMZM2G126594_T02 (Zea mays), 5'ss of exon 5
lower sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 5
AAAGGACTTGATGTGGATACCCTCTATGTGTCGCACATTCAAGTTAATCAGGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagt--ctatctaactaaagttgaagttttgctatgcg--atgaa--ctgttcttcatttggagctta---acattctgtttgcctacctggtccag-----------------------
|| || |||||||| || || |||   || || |||||||||||||| ||||| |||||||||||  |  | || |||||||| || ||||| |||||||||||||  |||    | |     ||  || |||  || ||  ||| |  ||||      |||||  | ||     || | || |    ||    |   |                       
AAGGGTCTTGATGTAGACACTCTCGTAGTCTCTCACATTCAAGTTAACCAGGCGCAGAAGCAGCGCAGACGTACTTACCGTGCCCACGGACGTATCAACCgtaagtggctactccattcctactgttgtgttgtaattcgttatggaacctgtgtaatgtttggcacgtacgtgaatcccgtgttgtcacaaattgatggtgttgcccattgggtgttgcag

upper sequence: GRMZM2G126594_T02 (Zea mays), 5'ss of exon 5
lower sequence: EFJ21308 (Selaginella moellendorffii), 5'ss of exon 4
AAAGGACTTGATGTGGATACCCTCTATGTGTCGCACATTCAAGTTAATCAGGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctatctaactaaagttgaagttttgctatgcgatgaactgttcttcatttggagcttaacattctgtttgcctacctggtccag
|||||  | || | ||||||||| ||||| |||||||| ||||| || ||||| ||||||||||| || ||||| ||||| |||||||| || ||||| |||||||             | ||||||| | |    || ||| ||          ||  |  |  | || || ||| |            
AAAGGCTTGGACGCGGATACCCTGTATGTCTCGCACATCCAAGTCAACCAGGCACAGAAGCAGCGCCGGAGGACTTACCGAGCTCATGGCCGGATCAATCgtaagt-------------ggtgaagttcttcct--cgttgatctagaagctgactgcgg--tggctttgtgcttggcag----------

upper sequence: GRMZM2G126594_T02 (Zea mays), 5'ss of exon 5
lower sequence: EFJ26852 (Selaginella moellendorffii), 5'ss of exon 4
AAAGGACTTGATGTGGATACCCTCTATGTGTCGCACATTCAAGTTAATCAGGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctatctaactaaagttgaagttttgctatgcgatgaactgttcttcatttggagcttaacattctgtttgcctacctggtccag
|||||  | || | ||||||||| ||||| |||||||| ||||| || ||||| ||||||||||| || ||||| ||||| |||||||| || ||||| |||||||         | || ||  | |  |  |  ||   ||    | | || ||| | ||||  ||                       
AAAGGCTTGGACGCGGATACCCTGTATGTCTCGCACATCCAAGTCAACCAGGCACAGAAGCAGCGCCGGAGGACTTACCGAGCTCATGGCCGGATCAATCgtaagt-------ggtgaa-ttctattcctctttggcttagaggcttacatcgttttgtgcttggcag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50333910|gb|CO529036.1|CO529036
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|32863531|gb|CF003213.1|CF003213
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATCGAGCTCATCTTGTCGGA
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGA
EST: gi|211490990|gb|FL061102.1|FL061102
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGA
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGA
EST: gi|67034878|gb|CO463411.1|CO463411
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|211047275|gb|FL465250.1|FL465250
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|14701464|gb|BI233882.1|BI233882
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGNGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTT
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTT
EST: gi|13149648|gb|BG319970.1|BG319970
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|76011925|gb|DT939095.1|DT939095
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|9731798|gb|BE510550.1|BE510550
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATCGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|67025568|gb|CO454317.1|CO454317
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|29947113|gb|CB816488.1|CB816488
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|44901076|gb|CK827621.1|CK827621
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|78026411|gb|DV494798.1|DV494798
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATCGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|71301597|gb|DR786861.1|DR786861
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|211490985|gb|FL061097.1|FL061097
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|31997674|gb|CD661710.1|CD661710
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|50329072|gb|CO524198.1|CO524198
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|166666607|gb|EG180228.1|EG180228
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCAC
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCAC
EST: gi|76011924|gb|DT939094.1|DT939094
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|40333920|gb|CK367990.1|CK367990
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|71301596|gb|DR786860.1|DR786860
EST:     GGCTCAGAAGCAGCGACGCAGGACATCCCGTGTTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|4610116|gb|AI600955.1|AI600955
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|71319581|gb|DR796538.1|DR796538
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|33770648|gb|CF272942.1|CF272942
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATA
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATA
EST: gi|78089300|gb|DV517674.1|DV517674
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|211496762|gb|FL061129.1|FL061129
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATCGAGCTCATCTTGTCGGAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAG
EST: gi|4647043|gb|AI622118.1|AI622118
EST:     GGCTCAGAAGCAGCGACGCAGGACATNCCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|76286824|gb|DV026392.1|DV026392
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|30088088|gb|CB886293.1|CB886293
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|50333911|gb|CO529037.1|CO529037
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|29946361|gb|CB816112.1|CB816112
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|78089302|gb|DV517676.1|DV517676
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|67043103|gb|CO469358.1|CO469358
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|45847409|gb|CN071352.1|CN071352
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|211490989|gb|FL061101.1|FL061101
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|9255119|gb|BE345587.1|BE345587
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATCGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|211493879|gb|FL061121.1|FL061121
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|211427864|gb|FL460788.1|FL460788
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|32910969|gb|CF015781.1|CF015781
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATCGAGCTCATCTTGTCGGA
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGA
EST: gi|211001401|gb|FL437014.1|FL437014
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|211386229|gb|FL452890.1|FL452890
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATCGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|14585587|gb|BI135339.1|BI135339
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|33101198|gb|CF061158.1|CF061158
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATCGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|33094670|gb|CF054664.1|CF054664
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATCGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|60394642|gb|DN227512.1|DN227512
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|31664276|gb|CD573001.1|CD573001
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|76912495|gb|DV164760.1|DV164760
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|14997333|gb|BI319308.1|BI319308
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|28576124|gb|CB282016.1|CB282016
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCCTGCCCCATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|30088089|gb|CB886294.1|CB886294
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|211490988|gb|FL061100.1|FL061100
EST:     GGCTCAGAAACAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|213172413|gb|FM189295.1|FM189295
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATCGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|89755157|gb|DY685693.1|DY685693
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|24765793|gb|CA400952.1|CA400952
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|31358169|gb|CD442526.1|CD442526
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|33093515|gb|CF053509.1|CF053509
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCATATCGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
EST: gi|76912497|gb|DV164761.1|DV164761
EST:     GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACC                         CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG
genomic: GGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctat ... cctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGGACTTGATGTGGATACCCTCTATGTGTCGCACATTCAAGTTAATCAGGCTCAGAAGCAGCGACGCAGGACATACCGTGCTCATGGACGCATCAACCgtaagtctatctaactaaagttgaagttttgctatgcgatgaactgttcttcatttggagcttaacattctgtttgcctacctggtccag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA