Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggacatgtggttgtgtacactgttgcacttgattacctgattcagtgcatgggattaatgttgtgctattgtggtcaatcgtttccttttcag

Basic information

species Zea mays
transcript GRMZM2G126594_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126594_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA11G37160.1 (Glycine max), 5'ss of exon 6
CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgta-tg--tggacatgtggttgtgtacactgt-tgcacttgattacctgattcagtgcatgggattaatgttgtgctattgtggtcaatcgtttccttttcag
|||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || ||||||||||||||| ||  ||  ||| |   |||  ||| | | |  ||||  |    |  ||   |||||   |||  | |  |  ||||||  |   | |            
CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattgaccatctctctgttaacagtatatatacttcctcttttcttt---tgcatcaaattcttatc-tattattgttcttg-tag------------

upper sequence: GRMZM2G126594_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 6
CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggacatgtggttgtgt-acactgttgcacttgattacctgattcagtgcatgggattaatgttgtgctattgtggtcaatcgtttccttttcag
|||||||||| || ||||||||||| ||||| || || || ||||||||||| || |||||||| ||||||  ||          | | | | |   ||  | |||| | |||  ||   |   | | || ||         ||| |  || || ||| |  ||  ||
CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAGgta-atgattgaccatctctctgataacattata-ttgacttcctcttt---tcttttgcatcaa---------attcttatctattgttgctcttgtag

upper sequence: GRMZM2G126594_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT1G27400.1 (Arabidopsis thaliana), 5'ss of exon 6
CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac-atgtggttgtgtacactgttgcacttgattacctg-attcagtgcatgggattaatgttgtgctattgtggtcaatcgtttccttttcag
||||||||||   |||||||||||| ||| | || ||||| ||||| ||||| || |||||||||||||||  |  |  ||      |  |       |    |  | ||| |  |||   |       | | || |      ||| | ||     | ||| |   |||
CTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAGgtaatttaatgatcccaacgcctctctgaatatcttcaaatacttatatttcatcttcatcactgatctcacataatttttgttg---ggttcttgcacag

upper sequence: GRMZM2G126594_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT1G67430.1 (Arabidopsis thaliana), 5'ss of exon 6
CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggacatgtggttgtgtacactgttgcacttgattacctgattcagtgcatgggattaatgttgtgctattgtggtcaatcgtttccttttcag
|||||||||||  |||||||||||| ||| | || ||||| ||||||||||| || || || |||||||||     | || |  ||     || ||    | || |  ||  |  | |    ||   |  | |||| |  | | ||  |   |  |     ||  ||
CTTACATGTCCAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgta-----atatatatttcatctcattggaaaaattcaggactagtgtta----ataacaacagtgttctcatttcgtatttgtttttgataattgtag

upper sequence: GRMZM2G126594_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S364_56V6.2 (Physcomitrella patens), 5'ss of exon 4
CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgta-tgtggac-atgtggttgtgtacactgttgcacttgatta---cctgattcagtgcatgggatta-atgttgtgctattgtggtcaatcgtttccttttcag-------------------
||||||||||||| || |||||||| |||||| || | || |||||||| |  ||||| |||||||||||| |||   | |      | | |   | |  |  |   | |    |  | ||||||  |  | |||  |  | || ||  |||| | ||  || |  || |                      
CTTACATGTCCTCTCCTTGCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAGgtaatgttacctactcatctctctctcccgaagttcgcaaatgtagctagtttcagtaaagagtattttacatggtcctcatgtgattaaaagtctaattgtagaaaaatcatcgatcgtgcag

upper sequence: GRMZM2G126594_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgta--tgtggacatgtggttgtgtac--actgttgcacttgattacctgattcagtgcatgggattaatgttgtg---------ctattgtggtcaatcgtttccttttcag------------------------------------
||||||||||||| || |||||||| ||||| ||| | || ||||||||||  ||||||||||||||||||  | | ||       ||   |    |  |||  |  |  || |||| | | ||   | |  ||  | | |||           |   |   || |  |||    |||||                                    
CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctg-tcctgtttttcgattttgtttcgtgactgtaaattcacaatttacagttatttataattcagaactgtaaattaaccggttctttacgggctttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50333910|gb|CO529036.1|CO529036
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|211047275|gb|FL465250.1|FL465250
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAACGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|9731798|gb|BE510550.1|BE510550
EST:     GCCACATCGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAAGCTTAGAGAAGGGTCTCTATTTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|44901076|gb|CK827621.1|CK827621
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|78026411|gb|DV494798.1|DV494798
EST:     GCCACATCGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAAGCTTAGAGAAGGGTCTCTATTTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|71301597|gb|DR786861.1|DR786861
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|76011924|gb|DT939094.1|DT939094
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|211490985|gb|FL061097.1|FL061097
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|31997674|gb|CD661710.1|CD661710
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|50329072|gb|CO524198.1|CO524198
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|24765793|gb|CA400952.1|CA400952
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|40333920|gb|CK367990.1|CK367990
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|71301596|gb|DR786860.1|DR786860
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGACCCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCACCCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|4610116|gb|AI600955.1|AI600955
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|71319581|gb|DR796538.1|DR796538
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|78089300|gb|DV517674.1|DV517674
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|76912497|gb|DV164761.1|DV164761
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|76286824|gb|DV026392.1|DV026392
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|30088088|gb|CB886293.1|CB886293
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|29946361|gb|CB816112.1|CB816112
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|67043103|gb|CO469358.1|CO469358
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|76912081|gb|DV164565.1|DV164565
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|45847409|gb|CN071352.1|CN071352
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|9255119|gb|BE345587.1|BE345587
EST:     GCCACATCGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAAGCTTAGAGAAGGGTCTCTATTTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|29947113|gb|CB816488.1|CB816488
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|67034878|gb|CO463411.1|CO463411
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|211493879|gb|FL061121.1|FL061121
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|213178138|gb|FM181222.1|FM181222
EST:     GCCACATCGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAAGCTTAGAGAAGGGTCTCTATTTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|211427864|gb|FL460788.1|FL460788
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|211001401|gb|FL437014.1|FL437014
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|211386229|gb|FL452890.1|FL452890
EST:     GCCACATCGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGTCTCTGTTTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|31358169|gb|CD442526.1|CD442526
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCANTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|14585587|gb|BI135339.1|BI135339
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|33101198|gb|CF061158.1|CF061158
EST:     GCCACATCGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAAGCTTAGAGAAGGGTCTCTATTTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|33094670|gb|CF054664.1|CF054664
EST:     GCCACATCGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAAGCTTAGAGAAGGGTCTCTATTTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|60394642|gb|DN227512.1|DN227512
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|14997333|gb|BI319308.1|BI319308
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|28576124|gb|CB282016.1|CB282016
EST:     GCCCCATAGAGCTCATCTTGTCGGAGAAGGAAGAACCCGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCCGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|211490988|gb|FL061100.1|FL061100
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAA                         GCCGAGTCTCAGATCGCAACCAGAAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|76912495|gb|DV164760.1|DV164760
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATTTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|89755157|gb|DY685693.1|DY685693
EST:     GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG                         GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: gi|33093515|gb|CF053509.1|CF053509
EST:     GCCATATCGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG                         GCTGAGTCTCAGATCGCAACCAGGAAAGCTTAGAGAAGGGTCTCTATTTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggacatgtggttgtgtacactgttgcacttgattacctgattcagtgcatgggattaatgttgtgctattgtggtcaatcgtttccttttcag

- - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA